PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018317-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

BBR-BPC

Protein Properties

Length: 752aa MW: 84301.1 Da PI: 8.112

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018317-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	26.2	2.2e-08	37	77	1	43
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdakirern 43 mddd+ + rn++yyep+ +k +lglqlmss+a+ d+ ++ WALNUT_00018317-RA 37 MDDDALNMRNWAYYEPS--FKGHLGLQLMSSMADCDTTFSSQS 77 9*9999***99..***************9985544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.9E-5	37	151	IPR010409	GAGA-binding transcriptional activator
Pfam	PF02731	5.1E-52	352	464	IPR004015	SKI-interacting protein SKIP, SNW domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0005681	Cellular Component	spliceosomal complex

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MSLGTYFRLE RSCYKNCTTS EEEEEEEEIF RWRAVVMDDD ALNMRNWAYY EPSFKGHLGL 60 QLMSSMADCD TTFSSQSNFW SSSLTDFTTT HSVKKRHSGY APEIPKAKML RKPRDKNNSS 120 VQLVKPAKKS MDVVINGIDM DISGIPISII MASLKELLPP VKSTTASSYD HSNDPWFKQR 180 FTSSEAEKSS VIKQNPVPPY LKRVGFVPRR VEDFVDGGAF PEIHLAQYPL DMGRDRSSKP 240 GSKILPVTVD AHGNVAYDAI VRQNENAKKT VYSQHKDLIP KVQKNDGEEQ EVDEEVEKEI 300 EETTLETKAA LEKIVNVRLS AAQPKNVPKQ SSETKFIKYK PSQQSAAFNS GAKERIIMMH 360 SPPRPVTVKD QQDWKIPPCI SNWKNPKGYT IPLDKRLAVD GRGLQDVQIN DNFAKLSEAL 420 YVAEQQAREA VAMRSKVQKE MMMKEKERKE QELRALAQKA RSERIGVAPP AAILIPSEKS 480 AMDGSDWRID YQHTKDKERD FPKETKDERE ERLRREKIRE ERRRERERER RLEAKDAAMG 540 KKSKITRDRD RDISEKVALG MASTGAGRGG EVMPKKDADA EMYGGADEQL ENIMKTDHFK 600 PDKGFTGVAE KAGTRDGPLE FEKVAEEADP FGLDQFLTEV KKGKKALDKV GTGGTMKAGA 660 GSSMRDGYEG GSSRTRIGFE RASLSQSSEF LSGMAHSSVQ SPLEFASGDD GGLKNPNPRF 720 CSPQDDLHPS PVVAPLVLGI SPTRNCDARD AS

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MSLGTYFRLE RSCYKNCTTS EEEEEEEEIF RWRAVVMDDD ALNMRNWAYY EPSFKGHLGL  60
QLMSSMADCD TTFSSQSNFW SSSLTDFTTT HSVKKRHSGY APEIPKAKML RKPRDKNNSS  120
VQLVKPAKKS MDVVINGIDM DISGIPISII MASLKELLPP VKSTTASSYD HSNDPWFKQR  180
FTSSEAEKSS VIKQNPVPPY LKRVGFVPRR VEDFVDGGAF PEIHLAQYPL DMGRDRSSKP  240
GSKILPVTVD AHGNVAYDAI VRQNENAKKT VYSQHKDLIP KVQKNDGEEQ EVDEEVEKEI  300
EETTLETKAA LEKIVNVRLS AAQPKNVPKQ SSETKFIKYK PSQQSAAFNS GAKERIIMMH  360
SPPRPVTVKD QQDWKIPPCI SNWKNPKGYT IPLDKRLAVD GRGLQDVQIN DNFAKLSEAL  420
YVAEQQAREA VAMRSKVQKE MMMKEKERKE QELRALAQKA RSERIGVAPP AAILIPSEKS  480
AMDGSDWRID YQHTKDKERD FPKETKDERE ERLRREKIRE ERRRERERER RLEAKDAAMG  540
KKSKITRDRD RDISEKVALG MASTGAGRGG EVMPKKDADA EMYGGADEQL ENIMKTDHFK  600
PDKGFTGVAE KAGTRDGPLE FEKVAEEADP FGLDQFLTEV KKGKKALDKV GTGGTMKAGA  660
GSSMRDGYEG GSSRTRIGFE RASLSQSSEF LSGMAHSSVQ SPLEFASGDD GGLKNPNPRF  720
CSPQDDLHPS PVVAPLVLGI SPTRNCDARD AS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_C	1e-111	198	642	42	510	SNW domain-containing protein 1
5xjc_R	1e-111	198	642	42	510	SNW domain-containing protein 1
5yzg_R	1e-111	198	642	42	510	SNW domain-containing protein 1
6ff4_C	1e-111	198	642	42	510	SNW domain-containing protein 1
6ff7_C	1e-111	198	642	42	510	SNW domain-containing protein 1
6icz_R	1e-111	198	642	42	510	SNW domain-containing protein 1
6id0_R	1e-111	198	642	42	510	SNW domain-containing protein 1
6id1_R	1e-111	198	642	42	510	SNW domain-containing protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of drought and salt tolerance. Acts as positive regulator of cell viability. {ECO:0000269\|PubMed:19339499}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, cold and salt stresses. Induced by wounding and treatment with abscisic acid (ABA), jasmonate (JA), salicylic acid (SA) and ethylene. {ECO:0000269\|PubMed:19339499}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814813.1	0.0	PREDICTED: SNW/SKI-interacting protein-like
Refseq	XP_018814818.1	0.0	PREDICTED: SNW/SKI-interacting protein-like
Swissprot	Q6K8D9	0.0	SKIPA_ORYSJ; SNW/SKI-interacting protein A
TrEMBL	A0A2I4E5Z5	0.0	A0A2I4E5Z5_JUGRE; SNW/SKI-interacting protein-like
STRING	cassava4.1_003972m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01930.2	1e-10	basic pentacysteine1

Publications ? help Back to Top
Hou X,Xie K,Yao J,Qi Z,Xiong L A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(15): p. 6410-5 [PMID:19339499] Shen J,Xie K,Xiong L Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol. Genet. Genomics, 2010. 284(6): p. 477-88 [PMID:20941508] Ning Y,Xie Q,Wang GL OsDIS1-mediated stress response pathway in rice. Plant Signal Behav, 2011. 6(11): p. 1684-6 [PMID:22067990] Zhang YP, et al. A comparative study of stress-related gene expression under single stress and intercross stress in rice. Genet. Mol. Res., 2015. 14(2): p. 3702-17 [PMID:25966139] Qin Y,Shen X,Wang N,Ding X Characterization of a novel cyclase-like gene family involved in controlling stress tolerance in rice. J. Plant Physiol., 2015. 181: p. 30-41 [PMID:25974367]