PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018329-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 332aa MW: 36353.3 Da PI: 7.1929

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018329-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.6	3.1e-34	182	239	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ WALNUT_00018329-RA 182 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHP 239 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-35	166	241	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-30	173	241	IPR003657	WRKY domain
PROSITE profile	PS50811	32.569	176	241	IPR003657	WRKY domain
SMART	SM00774	4.0E-40	181	240	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	182	239	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSDESKDQLY FHEYLFQDNQ NLASGSSSTG SYNHKPPASI AAANSSAYSS QGFDPSNYMS 60 FTECLQTPMD YNSMASAFGL SPSSSEVFAS MESNPKPMEV GDLGGGGSDI ILVTPNSSIS 120 SSSTEVGAEE DSGKSSKDKQ PKETEVGGES SKKVSKAKKK GDKKQREPRF AFMTKSEVDH 180 LEDGYRWRKY GQKAVKNSPF PRSYYRCTTQ KCTVKKRVER SFQDPSTVIT TYEGQHNHPI 240 PATLRGNAAA MSPPSMFTPP IGGRPTFIPQ DFFAQMPQIM SSSTSQAGGG TAPGSINYSQ 300 INPNYPHHQQ YQLPDYGLLQ DIIPSMFLKQ EP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	174	242	10	78	Probable WRKY transcription factor 4
2lex_A	2e-26	174	242	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841904.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	2e-77	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A2I4GDC9	0.0	A0A2I4GDC9_JUGRE; probable WRKY transcription factor 28
STRING	cassava4.1_011936m	1e-118	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	3e-66	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]