PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018461-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 566aa    MW: 62928 Da    PI: 8.3132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018461-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056475497123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kCp+C k+F++   L  H r+H
  WALNUT_00018461-RA 475 HKCPICLKVFPSGQALGGHKRSH 497
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-5835No hitNo description
PfamPF139123.3E-6832IPR007087Zinc finger, C2H2
SMARTSM003550.23931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.05196118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.51296123IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-897118No hitNo description
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139121.5E-698120IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-8381408No hitNo description
PROSITE profilePS5015710.055386413IPR007087Zinc finger, C2H2
SMARTSM003550.06386408IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-12386410IPR007087Zinc finger, C2H2
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
SMARTSM003550.035475497IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016475497IPR007087Zinc finger, C2H2
PfamPF139121.7E-12475497IPR007087Zinc finger, C2H2
PROSITE patternPS000280477497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MEEGRALVHV CKFCSKRFPC GRSLGGHMRS HLSNNSAETE GKLSKIKLSS FNTGRNQTNT  60
EMGLEPGTHA GYGLRENPKK TRRLADSGGE ASLFDKFCKE CGKKFQSWKA LFGHMKCHSE  120
KEKNSNSLED QDSLTSANQK LAMDSQSDNE TAAPNRRRRS ERKTRYTATE TSSFSLANAS  180
SSASEIEQER EEVAMCLMML SRDVGHWGGL NSSAESSDNN SVFLETPESF QTNPISKIEG  240
KISVCNGSEN EKVKKLSYKK LEPGNLDSED LKGRRSEFCT SGNSRSRSRR NKTEASNDGF  300
FNDDMIKTSQ IDDQFGFDDS EVELGKNFSK ETALSQAQLA SIKCNSSKRK FHDSYDPELR  360
SESLKNLTTN SLESEICKNP HRRSKFECTT CNKVFHSYQA LGGHRASHKK IKGCFASRIE  420
SSENSIETEL SPDPTADSKL VKLFKNENSI DQEIAAGCDK KTETSQGSKK SSKGHKCPIC  480
LKVFPSGQAL GGHKRSHLVG GSDTRHNPIP TIVIQKPVPE IRDFLDLNLP APVEEESNDH  540
VGFPPWWVGS THKHEALVNW ISNRIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820623.10.0PREDICTED: uncharacterized protein LOC108990953 isoform X1
TrEMBLA0A2I4EMK30.0A0A2I4EMK3_JUGRE; uncharacterized protein LOC108990953 isoform X1
STRINGEOY220000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-36C2H2-like zinc finger protein