PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018526-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

YABBY

Protein Properties

Length: 164aa MW: 18304.7 Da PI: 9.6945

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018526-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	172.4	2.9e-53	2	136	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevprv 112 vsvP + lf +vtvrCGhCt+l svn+a a q l+ ++ +++ +++ +++s s+s+ +++ + + +++ + + WALNUT_00018526-RA 2 SVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDAQ---------ATKCTTDYKIDS-----GSSSKCNNKIAMrAQVTTQAAIEE 78 79***************************9999999961.........122122222222.....222211111112112223333334 PP YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl WALNUT_00018526-RA 79 RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 136 5689**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-59	2	136	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	79	129	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	84	130	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSVSVPCSNL FDIVTVRCGH CTNLWSVNMA AAFQSLSWQD AQATKCTTDY KIDSGSSSKC 60 NNKIAMRAQV TTQAAIEERV VNRPPEKRQR VPSAYNQFIK EEIQRIKANN PDISHREAFS 120 TAAKNWAHFP HIHFGLMLET NNQAKLSNGS DKHLTSRAAA LLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814272.1	7e-98	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	1e-74	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2I4E4E2	2e-96	A0A2I4E4E2_JUGRE; axial regulator YABBY 5-like
STRING	GLYMA13G22620.1	1e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-77	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]