PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018740-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 681aa MW: 76959.2 Da PI: 5.3702

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018740-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.6	8.1e-24	88	185	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li+++++++e+ ++g+ lkk++W vs++m+erg ++sp+qC++k+++lnkrykk++++ +++ +++++++ WALNUT_00018740-RA 88 KWTEKMVKLLITIVSYIGEDASSGCitsgrrkssllLKKGKWMCVSEVMAERGHHISPQQCEDKFNDLNKRYKKLNDILGRGtSCKVVENP 178 7********************9899999999999********************************************568999888 PP trihelix 80 pyfdqle 86 +d ++ WALNUT_00018740-RA 179 NILDVMD 185 8887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-20	86	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MGPRQLRREQ NPCLDQQESS VQPQLQEGFP LQLLNLLKHD QPGYYVDHNK RERGKNSGSD 60 DDEMNCVEEG VDGHDGKGKK GSPWHRMKWT EKMVKLLITI VSYIGEDASS GCITSGRRKS 120 SLLLKKGKWM CVSEVMAERG HHISPQQCED KFNDLNKRYK KLNDILGRGT SCKVVENPNI 180 LDVMDLPMKA KEDVRKILSS KHLFYEEMCS YHNGNRLYLP HYPDVQWSLQ LALGTKDGCE 240 PHDLMPKRAD DFDEEDQDAG ADDQDEENGE MYAGFHEVPA KRLKRSKKAE ESSFSNPLNF 300 LGHNRGLGFH LKKDYTALNH VYSESGKANE LREQWMTLRS LQLEEQELQI KAQMLELEKQ 360 HFEWHRMSWK HDRELEKLRL ENESMKLENE HMALELNRKK ILPKTKGGID VSVLASEPTT 420 TKKLVETKEE KEEEVKVQQE EKKIDGNVGG QNAGGGKSGD ENGALAVGSL LNETKEKKEA 480 KEIEKNGEMS SEPKEEKTSI GEVKGEPEKT PAAAADAEGK ENNKSEKKTA DKEVKGEVQE 540 QEPEAAADAK HEEDKKCEKG NIAAKEVKDE PEKALKIMTL DKEAKGEPEK APEAATYANN 600 KEEKIYEKNS TGDKEIEGEP EKALQKTADK EVKVEVEKEP KKTPDNEMKG ESEKAPEPAA 660 NAINKEGNKY GMNTVNKEVK G

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MGPRQLRREQ NPCLDQQESS VQPQLQEGFP LQLLNLLKHD QPGYYVDHNK RERGKNSGSD  60
DDEMNCVEEG VDGHDGKGKK GSPWHRMKWT EKMVKLLITI VSYIGEDASS GCITSGRRKS  120
SLLLKKGKWM CVSEVMAERG HHISPQQCED KFNDLNKRYK KLNDILGRGT SCKVVENPNI  180
LDVMDLPMKA KEDVRKILSS KHLFYEEMCS YHNGNRLYLP HYPDVQWSLQ LALGTKDGCE  240
PHDLMPKRAD DFDEEDQDAG ADDQDEENGE MYAGFHEVPA KRLKRSKKAE ESSFSNPLNF  300
LGHNRGLGFH LKKDYTALNH VYSESGKANE LREQWMTLRS LQLEEQELQI KAQMLELEKQ  360
HFEWHRMSWK HDRELEKLRL ENESMKLENE HMALELNRKK ILPKTKGGID VSVLASEPTT  420
TKKLVETKEE KEEEVKVQQE EKKIDGNVGG QNAGGGKSGD ENGALAVGSL LNETKEKKEA  480
KEIEKNGEMS SEPKEEKTSI GEVKGEPEKT PAAAADAEGK ENNKSEKKTA DKEVKGEVQE  540
QEPEAAADAK HEEDKKCEKG NIAAKEVKDE PEKALKIMTL DKEAKGEPEK APEAATYANN  600
KEEKIYEKNS TGDKEIEGEP EKALQKTADK EVKVEVEKEP KKTPDNEMKG ESEKAPEPAA  660
NAINKEGNKY GMNTVNKEVK G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851057.1	0.0	PREDICTED: uncharacterized protein LOC109013424
TrEMBL	A0A2I4H4I7	0.0	A0A2I4H4I7_JUGRE; uncharacterized protein LOC109013424
STRING	evm.model.supercontig_2145.1	1e-142	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-87	sequence-specific DNA binding transcription factors