PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018746-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 551aa MW: 61636.6 Da PI: 6.5108

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018746-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.4e-30	268	327	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ WALNUT_00018746-RA 268 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 327 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-32	253	329	IPR003657	WRKY domain
SuperFamily	SSF118290	1.16E-27	260	329	IPR003657	WRKY domain
PROSITE profile	PS50811	29.092	263	329	IPR003657	WRKY domain
SMART	SM00774	4.9E-37	268	328	IPR003657	WRKY domain
Pfam	PF03106	8.5E-27	269	327	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MAMEIDLSLK LHAKEFHAAD HHELVLVDRE KDREDQKEKE KQDHEQAPQT KDHDFRDAKL 60 DQAVVVLLDD HQATAGDHQV DDDALIMEVS MEQTKEFSLL RKEMNRMKEE NKVLRNTVEQ 120 TLKDYNDLQT KLARIQQNNQ DMKDPQIFLL LHGNDHNDST QDQPKTVANN ILDITPKRLP 180 SPSHKDGIRE SELGLSLRLH TDSEEQDHRV LLEDKEDNKE ELATFATVQN KLQYRNDHLP 240 AGITSHVASP ANRKARVSVR VRCEAATMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPGC 300 PVRKQVQRCL EDMSILVTTY EGTHNHPLPV GATAMASTTS AAASFMLLDS SNPLSNGTSN 360 FTQVSLPNYH GSHMGNPSNS HLSNIRSINP NDPSKGIVLD MTNNSSYNNP PQIFPMASPS 420 YSPSQQAGNF SWMRGNYPSF HNGNLIFPIP RRMDLHDQDQ IKNWRDEENK SLMAENVTAI 480 TSNPKFRVAV AAAINSFINK ESPTSTHPVG TPLSGPRDHG EISSTTGSSN GNNWVLESLL 540 GNGNKPLGQS P

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MAMEIDLSLK LHAKEFHAAD HHELVLVDRE KDREDQKEKE KQDHEQAPQT KDHDFRDAKL  60
DQAVVVLLDD HQATAGDHQV DDDALIMEVS MEQTKEFSLL RKEMNRMKEE NKVLRNTVEQ  120
TLKDYNDLQT KLARIQQNNQ DMKDPQIFLL LHGNDHNDST QDQPKTVANN ILDITPKRLP  180
SPSHKDGIRE SELGLSLRLH TDSEEQDHRV LLEDKEDNKE ELATFATVQN KLQYRNDHLP  240
AGITSHVASP ANRKARVSVR VRCEAATMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPGC  300
PVRKQVQRCL EDMSILVTTY EGTHNHPLPV GATAMASTTS AAASFMLLDS SNPLSNGTSN  360
FTQVSLPNYH GSHMGNPSNS HLSNIRSINP NDPSKGIVLD MTNNSSYNNP PQIFPMASPS  420
YSPSQQAGNF SWMRGNYPSF HNGNLIFPIP RRMDLHDQDQ IKNWRDEENK SLMAENVTAI  480
TSNPKFRVAV AAAINSFINK ESPTSTHPVG TPLSGPRDHG EISSTTGSSN GNNWVLESLL  540
GNGNKPLGQS P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	259	329	8	77	Probable WRKY transcription factor 4
2ayd_A	2e-21	255	331	1	76	WRKY transcription factor 1
2lex_A	2e-21	259	329	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851059.1	0.0	PREDICTED: probable WRKY transcription factor 9
Swissprot	Q9C9F0	2e-75	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A2I4H4J5	0.0	A0A2I4H4J5_JUGRE; probable WRKY transcription factor 9
STRING	VIT_12s0055g00340.t01	1e-150	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9320	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-70	WRKY DNA-binding protein 9