PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018814-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 158aa    MW: 18387.8 Da    PI: 8.3391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018814-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1751.5e-2314101291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                          +++Y+k++GF+vrk+  +ksk +geit+r fvCskeg r+++k++    +++r+etrt+C  +l v++++ + k++v++++leHnH l+p
  WALNUT_00018814-RA  14 HWEKYGKHMGFNVRKHFANKSKIDGEITSRGFVCSKEGVRQTDKRN---YQTHREETRTNCSVRLSVNLDReTRKYKVYDFVLEHNHILCP 101
                         689***************************************9999...889999**************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-1915101IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGMEFDTLEE AWKHWEKYGK HMGFNVRKHF ANKSKIDGEI TSRGFVCSKE GVRQTDKRNY  60
QTHREETRTN CSVRLSVNLD RETRKYKVYD FVLEHNHILC PPENMGQLDR NMSGVQDFTI  120
DLTHTSGIKP KAAPELMCRE ADGRANLGYI DLNHRIGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818245.11e-112PREDICTED: uncharacterized protein LOC108989176
RefseqXP_018818246.11e-112PREDICTED: uncharacterized protein LOC108989176
RefseqXP_018818247.11e-112PREDICTED: uncharacterized protein LOC108989176
TrEMBLA0A2I4EFR81e-110A0A2I4EFR8_JUGRE; uncharacterized protein LOC108989176
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-20FAR1-related sequence 5