PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018898-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 413aa    MW: 43994.5 Da    PI: 7.1814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018898-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.33.8e-19309371163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ e++eL+++++ +++eN  L++e+++++  +++  +e+
  WALNUT_00018898-RA 309 ERELKRQRRKQSNRESARRSRLRKQVECDELAQRAELMTEENANLRSEVSRIRSDYEQILAEN 371
                         89*******************************************************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.8E-301100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.1E-53139277No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-16303367No hitNo description
SMARTSM003381.3E-18309373IPR004827Basic-leucine zipper domain
PfamPF001709.0E-18309371IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.185311374IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-10312367No hitNo description
CDDcd147021.38E-21314364No hitNo description
PROSITE patternPS000360316331IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGSSDTDKQA KEKEPKTPPA TNSTTTQDQS STTGTGAVNP DWSGFQAYSP IPPHGFLASS  60
PQAPPYMWGV QHIMPPYGTP PHPYVAMYPH GGIYAHPSIP PGPYPFSPFA MPPPNGMLEA  120
TGNTTGNMEA DGKPSEVKEK LPIKRSKGSL GSLNMITGKN NEHAKTSGAS ANGVHSKSAE  180
SASEGSSEGS DANSQSDSQL KSGGGQDSFE AEASQNGNSV HGPQNGGPNT PHTIMNQAMA  240
MVPMSGAGAA PLSVAGPTTN LNIGMDYWGA PTSSAIPAMR GKAPSTPVAG GIVTGSRDNV  300
QPQIWLQDER ELKRQRRKQS NRESARRSRL RKQVECDELA QRAELMTEEN ANLRSEVSRI  360
RSDYEQILAE NALLKERLGK VPGHEDPRSG RKDQHLSSDT QQTRQTEVVQ GSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325331RRSRLRK
2325332RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835293.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_018835294.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_018835295.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-169BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2I4FUH00.0A0A2I4FUH0_JUGRE; bZIP transcription factor 16-like
STRINGEOY252260.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-145basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]