PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018918-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 93aa    MW: 10498.6 Da    PI: 8.8683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018918-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-091257245
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        ++WT+ E + + +a + + ++   +W  +a+ +g g+t++++k r+ 
  WALNUT_00018918-RA 12 DSWTAKENKAFERALAVYDKDtpdRWYNVAKAVG-GKTEEEVKRRYE 57
                        58********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-6862IPR009057Homeodomain-like
PROSITE profilePS5129311.516964IPR017884SANT domain
SMARTSM007173.2E-91062IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-141267IPR009057Homeodomain-like
PfamPF002491.5E-71358IPR001005SANT/Myb domain
CDDcd001677.21E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASSSMSSKS SDSWTAKENK AFERALAVYD KDTPDRWYNV AKAVGGKTEE EVKRRYEELV  60
EDVKRIEAGR VPFPKYKTTG GSGQGNMTDE EKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-36193186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847817.14e-62PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-37RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2I4GVA08e-61A0A2I4GVA0_JUGRE; protein RADIALIS-like 1
STRINGevm.model.supercontig_62.1576e-46(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-38RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]