PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019004-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 71aa MW: 7947.37 Da PI: 10.2177

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019004-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.5	1.2e-11	5	33	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +++WT+eE+e l+ +v+++G+g Wk I + WALNUT_00019004-RA 5 KQKWTAEEEEALLAGVAKHGPGKWKNILK 33 79*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.772	1	41	IPR017930	Myb domain
SuperFamily	SSF46689	3.88E-12	2	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-12	4	46	IPR009057	Homeodomain-like
Pfam	PF00249	6.6E-9	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	5.35E-14	6	47	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPHFAPF LTHRSNIGLK VLLLLLFYLL 60 PLFTPSSAHL A

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018848601.1	6e-29	PREDICTED: uncharacterized protein LOC109011745
Swissprot	F4IEY4	2e-22	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A2I4GXG5	1e-27	A0A2I4GXG5_JUGRE; uncharacterized protein LOC109011745
STRING	Gorai.009G143000.1	1e-27	(Gossypium raimondii)
STRING	EOY27161	1e-27	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	3e-16	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]