PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019208-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 582aa    MW: 65418.3 Da    PI: 4.8918
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019208-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.21.8e-2172130260
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                         Fl+k+++++ed++l+ +isw  +g+sfvv+d+ +fa+ vLp  Fkh+nf+SFvRQLn+Y
  WALNUT_00019208-RA  72 FLSKTFDLVEDPALDPIISWGVSGESFVVWDPVDFARLVLPLNFKHNNFSSFVRQLNTY 130
                         9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-2068135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-4168240IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3169138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-127295IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-2472240IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-12110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-12123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-31208240IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDAEAGFFME NIGSSASPPP TEFEASSTIS PLPSFCEIPR TVPSSTGGGG GAENIGVPQP  60
LECLQGNPTP PFLSKTFDLV EDPALDPIIS WGVSGESFVV WDPVDFARLV LPLNFKHNNF  120
SSFVRQLNTY VGITVTPPVM VGVISDVYSV IRLYYKAIRH LLPMKIDSFR FCCVMNYCIT  180
VLIIKIFCYF LDFYVFLIHF KNQFGYCIQG FRKIDTDRWE FANEAFQRGK KHLLKNIQRR  240
KSPQSQQIGV YIQPSTEAGR PVPEGEIQKL RKEKGRLMQE VVELQQQQQG TIHHMEAVNQ  300
RLQTAEQRQK QMVSFLAKLV QNPAFLARLQ QQKVKGEIGS SRVRRKFVKQ HQYEMGKSDS  360
SMEGRTVKYQ PDWRHLITPS VAQDLNPVPA GKSQDSLSQD MVAMIEQAGL GVESIPFGSD  420
ELVMPEDLPV LQGFNKTLKQ VGEGSSRLGN QDLKGENSIS SQEEANPEYF VSFPEEITKE  480
KMISELSPGI ESIVKKEDIW SMGFDACTGM SVPSNELWGN PINYEVTDLE VTGGLTDIWD  540
LGFLQEIEGS GIDKWTIDES PSNEPESRDH KPKDDIPENR DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A2e-1466130165HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A2e-1466130165HEAT-SHOCK TRANSCRIPTION FACTOR
2ldu_A3e-14691301778Heat shock factor protein 1
5d5u_B3e-14691302687Heat shock factor protein 1
5d5v_B3e-14691302687Heat shock factor protein 1
5d5v_D3e-14691302687Heat shock factor protein 1
5hdg_A2e-1469130768Heat shock factor protein 1
5hdn_A2e-1469130768Heat shock factor protein 1
5hdn_B2e-1469130768Heat shock factor protein 1
5hdn_C2e-1469130768Heat shock factor protein 1
5hdn_D2e-1469130768Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839503.10.0PREDICTED: heat stress transcription factor A-2e-like
TrEMBLA0A2I4G6I20.0A0A2I4G6I2_JUGRE; heat stress transcription factor A-2e-like
STRINGXP_009365327.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-46heat shock transcription factor A3