PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019222-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 838aa MW: 91224 Da PI: 5.4595

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019222-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	104	188	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ +r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++lea WALNUT_00019222-RA 104 RWPRQETLALLKIRSEMDAVFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 188 8*******************************************************************866665..****985 PP
2	trihelix	105.8	3e-33	512	597	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf++l+a WALNUT_00019222-RA 512 RWPKVEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMQRMGYKRNAKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHELDA 597 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.18	101	163	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.586	103	161	IPR017877	Myb-like domain
CDD	cd12203	9.54E-28	103	168	No hit	No description
Pfam	PF13837	7.5E-21	103	189	No hit	No description
SMART	SM00717	0.037	509	571	IPR001005	SANT/Myb domain
Pfam	PF13837	1.7E-23	511	598	No hit	No description
PROSITE profile	PS50090	6.458	511	569	IPR017877	Myb-like domain
CDD	cd12203	1.04E-30	511	576	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MQEGGGVSKS QYGVSAEMAS STPAMAATAA VATSVGQPVG MEMESEQAQL VEAASPISSR 60 PPASAAMNLD ELVPLQSGGA GADEDALAAS AAAGDGGGVG GGNRWPRQET LALLKIRSEM 120 DAVFRDATLK GPLWEDVSRK LAELGYKRNA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY 180 KFFSELEALH SSAASSSVAG NNSSASLVVP PATATLTINP VVAPVSTGTG IGGMISSPMP 240 ISSNIRLPQV LPGLGMFPPD PSAAVLAPAV VSGSVIAPAA KPIGVSFSSN SSSSSPGSDE 300 DDDDEEESLE VEPSNVGSSR KRKRGSTKAG GSSDTRRMME FFENLMKQVM HKQEVMQQRF 360 LEAIEKREQD RMIREEAWKR QEMARLAREH ELMAQDRAIS ASRDAAIVAF LQKITGQPIQ 420 QPTPASNSPV APPPAVPPSH VPSPVLAATQ PPQPSQQQQQ QQQQKQQQQQ QQQALQHSHR 480 HTQVVMAIPE QQVLPQEIIS GGGGSFEPAS SRWPKVEVLA LIKLRSGLES RYQEAGPKGP 540 LWEEISAGMQ RMGYKRNAKR CKEKWENINK YYKKVKESNK KRPEDAKTCP YFHELDALYR 600 KKILGSSSSG GSGNSSFLDQ NRPQLQQQQP ENIELDPSVA PEIVSLPQPQ TTLASTESDH 660 DKNGASTDVQ AQASNIALPE GLFGEAIGGA PKKPEDIVKE LMEEREQHHQ PQQRLILDEY 720 DKIEDADSDN NDQEEDEDED EDEDLEEEGK MDYKIEEQWL STWIFSITKL TQNRRPRRKA 780 SNSTYLGLAT TSFKELVAIN TRPELSLKIA PVLALPISSK TALSTFNFKT SGSNGFHL

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MQEGGGVSKS QYGVSAEMAS STPAMAATAA VATSVGQPVG MEMESEQAQL VEAASPISSR  60
PPASAAMNLD ELVPLQSGGA GADEDALAAS AAAGDGGGVG GGNRWPRQET LALLKIRSEM  120
DAVFRDATLK GPLWEDVSRK LAELGYKRNA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY  180
KFFSELEALH SSAASSSVAG NNSSASLVVP PATATLTINP VVAPVSTGTG IGGMISSPMP  240
ISSNIRLPQV LPGLGMFPPD PSAAVLAPAV VSGSVIAPAA KPIGVSFSSN SSSSSPGSDE  300
DDDDEEESLE VEPSNVGSSR KRKRGSTKAG GSSDTRRMME FFENLMKQVM HKQEVMQQRF  360
LEAIEKREQD RMIREEAWKR QEMARLAREH ELMAQDRAIS ASRDAAIVAF LQKITGQPIQ  420
QPTPASNSPV APPPAVPPSH VPSPVLAATQ PPQPSQQQQQ QQQQKQQQQQ QQQALQHSHR  480
HTQVVMAIPE QQVLPQEIIS GGGGSFEPAS SRWPKVEVLA LIKLRSGLES RYQEAGPKGP  540
LWEEISAGMQ RMGYKRNAKR CKEKWENINK YYKKVKESNK KRPEDAKTCP YFHELDALYR  600
KKILGSSSSG GSGNSSFLDQ NRPQLQQQQP ENIELDPSVA PEIVSLPQPQ TTLASTESDH  660
DKNGASTDVQ AQASNIALPE GLFGEAIGGA PKKPEDIVKE LMEEREQHHQ PQQRLILDEY  720
DKIEDADSDN NDQEEDEDED EDEDLEEEGK MDYKIEEQWL STWIFSITKL TQNRRPRRKA  780
SNSTYLGLAT TSFKELVAIN TRPELSLKIA PVLALPISSK TALSTFNFKT SGSNGFHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	KRNAKKCKE
2	774	778	RPRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018844915.1	0.0	PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A2I4GLZ0	0.0	A0A2I4GLZ0_JUGRE; trihelix transcription factor GTL1-like isoform X1
STRING	EOY23769	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-39	Trihelix family protein