PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019357-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 758aa    MW: 86434.7 Da    PI: 6.9808
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019357-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.8e-2059152190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+++Ak++GFs+r+++++ +    + +t+r+f C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnH
  WALNUT_00019357-RA  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFACHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfeVPEWRVTGFSNIHNH 149
                         6***************9998874556679*******************9*******************99887676789************ PP

                FAR1  88 ela 90 
                         el 
  WALNUT_00019357-RA 150 ELL 152
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1759152IPR004330FAR1 DNA binding domain
PfamPF105515.8E-23275367IPR018289MULE transposase domain
PROSITE profilePS509669.668539587IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-6561585IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MSEGTSVVME SSENGTDLSQ DDIGTIEGTP DNTILSRQTS VNLVPFIGQR FISQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFACHRGGYP QMKPSEDGKM QRNRKSSRCG  120
CQAYMRIVKR ADFEVPEWRV TGFSNIHNHE LLKPQEVRLL PAYCTISPDD KIRICMFAKA  180
GMSVRQMLRL LELEKGVKLG CLPFTEIDVR NLLQSFRNVD KDSDSIDLIA MCKKLKDENP  240
NFKYDFKIDR HNRLEHIAWT YASSVQLYEA FGDAMVFDTT HRLDAYDMLL GIWLGVDNHG  300
MTCFFGCVLL QDENMQSFSW ALKTFLGFMK RKASQTILTD HNMWLKEAIS IEMPETKHAF  360
CIWHIVAKFS DWFSVLLGSR YDDWKAEFYR LYNLESVEDF ELGWREMVNK YGLNANKHIA  420
SLYALRTVWV LSFLRLYFFA GIMSTCQSES INAFIQRVLS AQSQLDRFVE QVAEVVDFND  480
RVGAKQKMQW KLQKMILKTG SPIESHAATL LTPYAFGKLQ DELVLAPQYA SLPIDEGCFQ  540
VRHHTQMDGG CKVIWAPCQG HISCSCHQFE FSGILCRHVL RVLSTNNCFH IPDQYLPTRW  600
RVVNSSSTNP FQTASTREHS EKIQLLESMA STLITESIEM EERLDVACEQ IAIALSRVKE  660
LSRSTHGMNE ISYNCPSDSL ILPEVEDADG IVRSFTIGHP HDSITLGKIK ERRPKDGTEI  720
TRKRRHCSGP CCGHFGHDGS ACSIMGDDDL HGDALGYL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813110.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_018813111.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_018813112.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2I4E1390.0A0A2I4E139_JUGRE; protein FAR1-RELATED SEQUENCE 11-like
STRINGEOY066540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]