PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019391-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRF
Protein Properties Length: 601aa    MW: 64636.1 Da    PI: 7.6596
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019391-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24228272145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  WALNUT_00019391-RA 228 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 272
                         79****************************************985 PP
2QLQ52.51.5e-18158194137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++F+++Q+ +L++Q+l+yKy+  n+PvP++Ll +i++
  WALNUT_00019391-RA 158 GPFSPSQWIELEHQALIYKYITLNVPVPSNLLSPIKR 194
                         59*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-9158194IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.844159194IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-12159192IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287228272IPR014977WRC domain
PfamPF088797.7E-21229271IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MSKMDFGLMT LEALAGPEGG GGSSKASDPE TKLKGLGSGL VEQEDSGAGE DDWKSSKMAK  60
SGSLSSHKPM PLYHGSPLLR SNAFSTGDGR KEEHTLSFSS VKSEVPFLRK DGLIVDKNIH  120
NSFFPYYQRP PSAYPTNAGC DSGSLNASMH GTFAGVRGPF SPSQWIELEH QALIYKYITL  180
NVPVPSNLLS PIKRSLYPYG LSGSTPGSLP HNSLGWGSFH LGFSGNTDPE PGRCRRTDGK  240
KWRCSRDAVA DQKYCERHIN RGRHRSRKPV EGQTGHAASG TTNLKVVPIT SSVSKSVLPS  300
GASNSLTIGQ HQFKKLRPGD VVNRSVDAVV SRMQESGALS TMSSAISLKS NESTFTISKQ  360
EIPLEEFSES LFGLVSTDSL HNPSHRGSCL NSKSYGSFLD FNDQETQDQN PLLQFIDDWP  420
KDQSNCSVIS WPEELKLDWT QLSMSIPMAT SDFSSSSSSP TQEKLPVSPP RLVRTQFEPT  480
QMNLGISTEL SEPSKNQTNR IPISWGTSMG GPLGEVLTST TNIARASKNS SALILLTEGW  540
DSSPQLGSSP TGVLQKVPFG SLSNSSSGSS LGAENKRIRE GGSMFDDVLG STLASSSIPS  600
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4886167e-61AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837261.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 1-like
TrEMBLA0A2I4G0410.0A0A2I4G041_JUGRE; LOW QUALITY PROTEIN: growth-regulating factor 1-like
STRINGVIT_00s0494g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-116growth-regulating factor 1