PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019398-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 653aa    MW: 72927.8 Da    PI: 6.8212
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019398-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.1e-11322378155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+ ++ a++k++g
  WALNUT_00019398-RA 322 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDLEEKAARSYDLAALKYWG 378
                         78*******************87776664446666.77***9**************98 PP
2AP246.59.4e-15421472155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00019398-RA 421 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 472
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-13322388IPR016177DNA-binding domain
CDDcd000187.52E-18322386No hitNo description
PfamPF008472.3E-8322378IPR001471AP2/ERF domain
PROSITE profilePS5103217.122323386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-11323387IPR001471AP2/ERF domain
SMARTSM003801.5E-21323392IPR001471AP2/ERF domain
PRINTSPR003675.0E-6324335IPR001471AP2/ERF domain
PfamPF008471.4E-9421472IPR001471AP2/ERF domain
CDDcd000186.16E-25421482No hitNo description
SuperFamilySSF541711.83E-17421481IPR016177DNA-binding domain
PROSITE profilePS5103219.019422480IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-18422480IPR001471AP2/ERF domain
SMARTSM003802.8E-34422486IPR001471AP2/ERF domain
PRINTSPR003675.0E-6462482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MKSMENDYIN NNSNDNNANW MGFSLSPHMT MEVSSGPPNH HQTHPPSAAV STAVPANFFH  60
SQPHLYYGIY HGTEGDASLY APLSAMPLKS DGSLCMMEAL DKSQPQAMGT TSTPKLENFF  120
GGAAMGTNHY ESNDREAMAL SLDSMFYNQM PDHEANNQNC LDHFDQSSRN QEQPQQIQAQ  180
HYSYYSGFKS HAMILRDTRE SQFADCNLQL PTMADDRVSG LKNWISRIYP VNQLGEQKMI  240
GCMGDNGSES GAIGAMSCGD LHSLSLSVRS GSQSSCVTGS QRISPTVTDY IGMDTKKRGP  300
EKVDQKQIVH RKSLDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ SRKGRQGGYD  360
LEEKAARSYD LAALKYWGPS THINFPLENY QKELDEMKNM TRQEYVAHLR RKSSGFSRGA  420
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD  480
ITRYDVERIM ASSTLLPGEV AKRSKETGSN TIEALDHLPT DKSNGESIIS QKNNECESEW  540
KTAELHQETD DKQPKTESYR TQFFSEGMIE QEVEDSANKR THLSNVSSLV TSLSSSREGS  600
PDRASHPMLF GLPTSSSKLL ATPTGANSWN PSTQMRPALS MPDMRLLAAW TDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837269.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-143CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2I4G0480.0A0A2I4G048_JUGRE; AP2-like ethylene-responsive transcription factor ANT
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]