PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019545-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26014.8 Da    PI: 8.7909
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019545-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.7e-271059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgkl+e+ss
  WALNUT_00019545-RA 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLFEFSS 59
                        9***********************************************96 PP
2K-box74.92.2e-2581170998
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         + +++ + lq+e+a L++e++nLq +qRh++G++L  L +++Lq+Le+qLe sl+ +R +K++ l+++i+el +k + +++en++L kk+
  WALNUT_00019545-RA  81 NPASEVKFLQREVAILRQELQNLQVNQRHMMGQQLYALGVEDLQNLENQLEMSLQGVRLTKEQALTDEIQELSRKSNLVHQENMELYKKV 170
                         5678899*******************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.132161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.72E-43278No hitNo description
SuperFamilySSF554552.88E-31283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2383170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.16386178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGKIAIQR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLFEFSST  60
SIKAVTERYN KSKEEHLQLQ NPASEVKFLQ REVAILRQEL QNLQVNQRHM MGQQLYALGV  120
EDLQNLENQL EMSLQGVRLT KEQALTDEIQ ELSRKSNLVH QENMELYKKV ILVRQENMEL  180
CNKVYSTRHM NGASISSFIP YGTNLRDDLD VPHVHLQLCP PEQQNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21176176MEF2C
5f28_B3e-21176176MEF2C
5f28_C3e-21176176MEF2C
5f28_D3e-21176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837041.11e-167PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ9SZJ69e-93AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A2I4FZH91e-165A0A2I4FZH9_JUGRE; MADS-box transcription factor 23-like isoform X1
STRINGXP_010254615.11e-111(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-95AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]