PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019647-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 1162aa    MW: 128551 Da    PI: 5.8494
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019647-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094494861954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LAk++gLt +qV +WF N R +
  WALNUT_00019647-RA 449 FEHflHPYPKDSEKIMLAKETGLTRNQVANWFINARVR 486
                         664459******************************88 PP
2Homeobox28.92e-09108511221954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox   19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54  
                          Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  WALNUT_00019647-RA 1085 FEHflHPYPNDTEKLMLASQTGLTKSQVSNWFINARVR 1122
                          554459******************************88 PP
3BELL116.81.1e-37313384172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+q+lq++k+kLls+l+eVd+rYkqy++q+q ++ss ++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi
  WALNUT_00019647-RA 313 EQQDLQNRKTKLLSMLDEVDRRYKQYYNQVQFLVSSVDMVAGCGAAEPYTALALQTISRHFRCLRDAIMGQI 384
                         6899******************************************************************98 PP
4BELL100.61.2e-329471018172
                BELL    1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72  
                          e+qelq k+akL+slleeVd r+  y+ ql+ v+ssFe +ag+g+ak Yt+lAl+a+S+hF +L+dai++qi
  WALNUT_00019647-RA  947 EKQELQVKIAKLISLLEEVDGRFDEYYSQLEEVVSSFELIAGVGAAKKYTALALQAMSKHFCSLRDAIVSQI 1018
                          689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-56232382IPR006563POX domain
PfamPF075262.6E-46238381IPR006563POX domain
PROSITE profilePS5007112.293427490IPR001356Homeobox domain
SMARTSM003891.5E-9430494IPR001356Homeobox domain
CDDcd000863.30E-12430491No hitNo description
SuperFamilySSF466891.03E-16431497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27433496IPR009057Homeodomain-like
PfamPF059203.9E-17447486IPR008422Homeobox KN domain
SMARTSM005742.7E-348781016IPR006563POX domain
PfamPF075261.1E-368831015IPR006563POX domain
PROSITE profilePS5007111.95310631126IPR001356Homeobox domain
SMARTSM003894.1E-910661130IPR001356Homeobox domain
CDDcd000865.06E-1110661127No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2710711132IPR009057Homeodomain-like
SuperFamilySSF466892.4E-1710721134IPR009057Homeodomain-like
PfamPF059201.1E-1610831122IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MATYFQSLSN QRDVLQTPYP GDTKFASYSE PPFHPGNIMM YLNQASSASY SDILSGGSLS  60
PLNRDESVGG RNEMTLVPPS GDRVSMQSID GQLNSVPGDP LIDSVTGDSQ MIPRTQLGVS  120
AGEQNIQCQG LLSLSLGTQM PSAIPVASFG NQYPNPGGSS FSTTSLQNLM KGTISSKADE  180
NHQYGELRTA ECLLSGFSGA NQNNTRTETL CNPHSSMSHK EMLSDQYLYE PSGFANTMLN  240
SKYLKPAQQL LDEVVNVKKA LKQHGLNRHQ SILGIGLDGS KERDGRSSSW SAKISSDPGE  300
STPNSFCELS PAEQQDLQNR KTKLLSMLDE VDRRYKQYYN QVQFLVSSVD MVAGCGAAEP  360
YTALALQTIS RHFRCLRDAI MGQIQATQRS LGEQDTSLCG QGGIPRLRYV DQHLRQQRAL  420
QQFGVMRHAW RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKIMLAKETG LTRNQVANWF  480
INARVRLWKP MVEEMYKEEF GESELNSQSS PENASKAPRD NNSGAFEDRG EELQDISVIS  540
TTADGVHHGQ AHESKFVNVE INGKTTGIGF GSSVVDDHSL YNSDEINIPH HQGGDGSLVA  600
AATTYDMSEL GTFVDGSQVS LALELRHCEN DGFPMSGVTN LRAGQLGNDP TLWFPQWSNI  660
LRFLIWYPQI GVQSELAAVL HSKSFIAFML PVEFNMTSQD SPPNPALSSV HSFTLSDSIT  720
DQNHFQNQPF DAYGSSLRGR DHTLPQSFGV FPSIQSLGER MSRSIDLVQA STVGEESEIN  780
HTRHFMDLLG AANETNHQAQ RLSLSLGSHV LVPSVQYRQR SLSSDLLSPS YLMSGEESRE  840
ACNPGMEHVS NGYSFLGSAF ASSSSSLNRT CPTSYGTESF AAVIRNSIYL RPAQSLLNEI  900
VDVSGKAIDI SNGKYISKLS RGGRLGALGL SSELKAELYS NGLLSAEKQE LQVKIAKLIS  960
LLEEVDGRFD EYYSQLEEVV SSFELIAGVG AAKKYTALAL QAMSKHFCSL RDAIVSQINI  1020
TKRKFLQAFP RISTGLSQLN LFDSETRHTR MSLQQLGMIQ NQRQAWRPIR GLPETSVTIL  1080
RSWLFEHFLH PYPNDTEKLM LASQTGLTKS QVSNWFINAR VRLWKPMIEE MYKEEFGDSA  1140
EDLNPLAGNS MTREDFTDHA ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-164361129158Homeobox protein Meis1
4xrs_B3e-164361129158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843851.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X1
TrEMBLA0A2I4GIY80.0A0A2I4GIY8_JUGRE; BEL1-like homeodomain protein 7 isoform X1
STRINGVIT_18s0001g13130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-111BEL1-like homeodomain 3