PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019759-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 243aa MW: 27713.3 Da PI: 6.9254

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019759-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.6	2.7e-45	5	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +pGfrF Pt+eelv++yL+kk+eg++ +l++vi+ v +y++ePw+Lpk +++++++w+fF++r++++a+g r+ r+t sgyWkatg+ WALNUT_00019759-RA 5 QPGFRFYPTEEELVSFYLHKKLEGTRPDLHRVIPVVPVYDIEPWNLPKlageLCQGDTEQWFFFTPRQEREAKGGRPCRTTVSGYWKATGS 95 69*************************99************656754455777**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ WALNUT_00019759-RA 96 PGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-46	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	46.999	4	162	IPR003441	NAC domain
Pfam	PF02365	1.0E-23	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEVTQPGFRF YPTEEELVSF YLHKKLEGTR PDLHRVIPVV PVYDIEPWNL PKLAGELCQG 60 DTEQWFFFTP RQEREAKGGR PCRTTVSGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEIET GQSNTVVPKL RHEFSLCRMY VISGSFRAFD RRPEVSTRMT 180 QNVVDGAAST PPQNATVVEK TSSSDTSFSG GDHADLQEVA GSICWDITDT LEPLWEWEPL 240 NWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-33	6	160	19	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	6	160	22	166	NAC domain-containing protein 19
3swm_B	4e-33	6	160	22	166	NAC domain-containing protein 19
3swm_C	4e-33	6	160	22	166	NAC domain-containing protein 19
3swm_D	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_A	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_B	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_C	4e-33	6	160	22	166	NAC domain-containing protein 19
3swp_D	4e-33	6	160	22	166	NAC domain-containing protein 19
4dul_A	3e-33	6	160	19	163	NAC domain-containing protein 19
4dul_B	3e-33	6	160	19	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814651.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-92	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2I4E5H2	0.0	A0A2I4E5H2_JUGRE; NAC domain-containing protein 90-like
STRING	cassava4.1_014914m	1e-122	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-89	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]