PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019862-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 235aa    MW: 26205.4 Da    PI: 7.9177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019862-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17113163255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+ ng  +r +lg+f+t  +Aaka++ a+ k++g
  WALNUT_00019862-RA 113 HYRGVRRRP-WGKFAAEIRDPTRNG--RRAWLGTFDTDVDAAKAYDCAAFKMRG 163
                         7********.**********98887..**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-30112172IPR001471AP2/ERF domain
PROSITE profilePS5103224.144113171IPR001471AP2/ERF domain
SMARTSM003807.2E-35113177IPR001471AP2/ERF domain
PfamPF008471.8E-12113163IPR001471AP2/ERF domain
CDDcd000183.30E-29113171No hitNo description
SuperFamilySSF541713.07E-22113172IPR016177DNA-binding domain
PRINTSPR003674.7E-13114125IPR001471AP2/ERF domain
PRINTSPR003674.7E-13153173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
METANESSVL ELIRQHLLGD FTSTDSFVNS LNFNAPKAIC SHPVKHEAES PISESESYCP  60
IFDQNYHTGT GTFIISSTPK HLLKKVNHPK SPESAEGSIM KVSDCGYQQQ GRHYRGVRRR  120
PWGKFAAEIR DPTRNGRRAW LGTFDTDVDA AKAYDCAAFK MRGRKAILNF PLEAGVSTPN  180
TFSGRKRRRE NISVLKVPES DELAVESWVF PDQEEELDQA PVLSSSSKKP VTASC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-29110172264ATERF1
3gcc_A3e-29110172264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835820.11e-177PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A2I4FW031e-176A0A2I4FW03_JUGRE; ethylene-responsive transcription factor ERF106-like
STRINGPOPTR_0003s15060.16e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.15e-47ERF family protein