PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019864-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 262aa    MW: 29294.1 Da    PI: 9.2162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019864-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20135185255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a++ a+ +++g
  WALNUT_00019864-RA 135 HYRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTYETAEEAALAYDVAAYRMRG 185
                         7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32134194IPR001471AP2/ERF domain
PROSITE profilePS5103225.001135193IPR001471AP2/ERF domain
CDDcd000185.99E-30135194No hitNo description
SuperFamilySSF541711.31E-23135195IPR016177DNA-binding domain
PfamPF008472.6E-14135185IPR001471AP2/ERF domain
SMARTSM003801.7E-37135199IPR001471AP2/ERF domain
PRINTSPR003676.8E-11136147IPR001471AP2/ERF domain
PRINTSPR003676.8E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNEATLGDFG FPHLCHRSSG FSGLFPFLTE QWGDLPFHVN DSEDMIVYNS LRDAVSFGWS  60
PLDLKATNVK AEPEELSQLP SITGIVLTRE AASARKLYAS SSFIDPKSEN QSEIVTETAK  120
KYFQNADRKV IRERHYRGVR RRPWGKYAAE IRDPAKNGAR VWLGTYETAE EAALAYDVAA  180
YRMRGSKALL NFPHRIGSGE PEPVRITAKR RDPEAALDSS SAKKRKGLAA NEAELKIERE  240
SKVFQLGHKM GPLPIAEQLL VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-35134200470ATERF1
3gcc_A5e-35134200470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208225KRRDPEAALDSSSAKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835823.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ9LW501e-84ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2I4FVZ60.0A0A2I4FVZ6_JUGRE; ethylene-responsive transcription factor 2-like
STRINGEOY227731e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-45ethylene responsive element binding factor 1