PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019934-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 366aa MW: 40960.3 Da PI: 10.3973

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019934-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	145.9	2.9e-45	90	241	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa 70 ++kkdrhski+T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ +aike ++ + WALNUT_00019934-RA 90 PVKKDRHSKIYTSQGLRDRRVRLSIGIARKFFDLQDMLGFDKASQTLDWLLTKSRKAIKEVAQMkqnfsghakrlspcsseydvfsG---- 176 68************************************************************77665555544433222222211.... PP TCP 71 seceaesssssasnsssg...................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + +++ s+ +k ++ s+ + + lakesrakarararertrekm+++ WALNUT_00019934-RA 177 ------------I----NavtdseklegrvsksksllSSSVSN-DKKTKTLSKGAIHLLAKESRAKARARARERTREKMCTE 241 ............1....11112222333444444554333333.33333444444699********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-43	91	240	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.1	92	150	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.483	220	237	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MFSSTSSLNP PPHFPSSSDH HFPPPFANHE LGDIFLNQYH HDPLSGPFLP TNAPFPGNVN 60 FAVSKHPTMN RENDIGEYPP SLSNFLVNKP VKKDRHSKIY TSQGLRDRRV RLSIGIARKF 120 FDLQDMLGFD KASQTLDWLL TKSRKAIKEV AQMKQNFSGH AKRLSPCSSE YDVFSGINAV 180 TDSEKLEGRV SKSKSLLSSS VSNDKKTKTL SKGAIHLLAK ESRAKARARA RERTREKMCT 240 ERLHESKKCP TGPQILQQYL SPQSQRADSE RPSKVVAVEI EELHSHLADQ GLRASLIDQE 300 SVVIRKKLKP SGRLDYHQPN LVISKDLSST NGNSNYFPNL SLTWGINSAV AVRSSFFTVG 360 NMNHSN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MFSSTSSLNP PPHFPSSSDH HFPPPFANHE LGDIFLNQYH HDPLSGPFLP TNAPFPGNVN  60
FAVSKHPTMN RENDIGEYPP SLSNFLVNKP VKKDRHSKIY TSQGLRDRRV RLSIGIARKF  120
FDLQDMLGFD KASQTLDWLL TKSRKAIKEV AQMKQNFSGH AKRLSPCSSE YDVFSGINAV  180
TDSEKLEGRV SKSKSLLSSS VSNDKKTKTL SKGAIHLLAK ESRAKARARA RERTREKMCT  240
ERLHESKKCP TGPQILQQYL SPQSQRADSE RPSKVVAVEI EELHSHLADQ GLRASLIDQE  300
SVVIRKKLKP SGRLDYHQPN LVISKDLSST NGNSNYFPNL SLTWGINSAV AVRSSFFTVG  360
NMNHSN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269\|PubMed:16236768, ECO:0000269\|PubMed:8893002}.
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812094.1	0.0	PREDICTED: transcription factor CYCLOIDEA-like isoform X2
Swissprot	O49250	5e-35	CYCLD_ANTMA; Transcription factor CYCLOIDEA
Swissprot	Q9SBV6	3e-35	CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	A0A2I4DY60	0.0	A0A2I4DY60_JUGRE; transcription factor CYCLOIDEA-like isoform X2
STRING	cassava4.1_022722m	3e-68	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	9e-33	TCP family protein

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647] Reeves PA,Olmstead RG Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution. Mol. Biol. Evol., 2003. 20(12): p. 1997-2009 [PMID:12885953] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Luo D,Carpenter R,Vincent C,Copsey L,Coen E Origin of floral asymmetry in Antirrhinum. Nature, 1996. 383(6603): p. 794-9 [PMID:8893002]