PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019996-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 91aa    MW: 10392.8 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019996-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.5e-0718571554
                        HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +i +  ++Lr+l+P+ + + +s K+  + +L+++++YI++L
  WALNUT_00019996-RA 18 QIIDLVSKLRQLVPEiR-NRRSDKVPASKVLQETCNYIRNL 57
                        5667779********77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.448357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-91777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-81773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-41857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQSG TSRITDDQII DLVSKLRQLV PEIRNRRSDK VPASKVLQET CNYIRNLHRE  60
VDDLSERLSQ LLATIDAESA EASIIRSLIT Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RQLVPEIRNRR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9169518e-50EU916951.1 Corylus avellana clone K88-15-23 microsatellite sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835917.19e-58PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4FW892e-56A0A2I4FW89_JUGRE; transcription factor PRE6-like
STRINGXP_008230751.13e-48(Prunus mume)
STRINGXP_009347048.13e-48(Pyrus x bretschneideri)
STRINGXP_008341557.13e-48(Malus domestica)
STRINGEMJ163983e-48(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-37bHLH family protein