PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00020145-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HB-other

Protein Properties

Length: 1779aa MW: 200721 Da PI: 5.1325

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00020145-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	35	90	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ + yps+++r eL++klgL++rq ++WF+ rR k+kk WALNUT_00020145-RA 35 PKRQMKTPFQLETLEKAYSLETYPSEATRVELSEKLGLSDRQLQMWFCHRRLKDKK 90 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-18	13	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	21	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.439	31	91	IPR001356	Homeobox domain
SMART	SM00389	8.8E-18	33	95	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-16	35	90	IPR001356	Homeobox domain
CDD	cd00086	8.06E-14	36	91	No hit	No description
SMART	SM00571	8.5E-22	568	627	IPR018501	DDT domain
PROSITE profile	PS50827	16.416	568	627	IPR018501	DDT domain
Pfam	PF02791	1.2E-17	569	624	IPR018501	DDT domain
Pfam	PF05066	1.0E-14	746	814	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.0E-8	963	1006	IPR028942	WHIM1 domain
Pfam	PF15613	2.0E-12	1147	1219	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1779 aa Download sequence Send to blast
MDAASEGDNH NNQNDAHDDN SNSKFGNSSE GLSKPKRQMK TPFQLETLEK AYSLETYPSE 60 ATRVELSEKL GLSDRQLQMW FCHRRLKDKK EVPAKRPRKT AAAMALPESP VDELRAGGEP 120 GSDYGSGSGS SPFGRLEFRN AMTRSVVDDV PVGRRYYESR QSILELRAIA CVEAQLGEPL 180 RDDGPILGIE FDPLPPDAFG APIAAVPEQQ KRSGQSYEGK LYEQRDVKPY KAPRVLREYP 240 FLQDQSGIRS DAFGQVAQSH FHEPMVDGPT ARPSSLVLGN ELLPRVHGVQ GHGSRVRLLS 300 QQDRQGLALS SPPRDDDRVP ERDSLTNVRT NAQFSDHLVV GPDDPFVLSD GKSFHNDAII 360 RKERKRKSEE ASVAREVEAH EIRIRKELEK QDILRRKKVL ASLLANIMNL FCQSEERIRK 420 EMERQDRERR KEEERLLREK QREEERTKRE QRREIERREK FVQKEYLRAE KRRQKEELRK 480 EKEAVRRKAA IEKATARRIA RESMELIEDE QLELMELAAA SKGLSSMIHL DHDSLQNLEL 540 FRDSLSAFPP KSVKLKKPFA IQPWINSEEN IGNLLMVWRF FITFADVLKL WPFTLDEFVQ 600 AFHDYDSRLL GEIHVALLKL IIKDIEDVAR MPSNGLGMNQ NGAANPGGGH PQIVEGAYAW 660 GFDIFNWQQH LNTLTWPEIF RQLALSAGFG PQLRKRSITW SYPHENDEVF TILSFGNHVL 720 VHWVFKLLVQ HSDGHAHISR HRLTPGTVKF AAFHVLSLEG SEGLTVLELA DKIQKSGLRD 780 LTTSKTPEAS ISVALTRDAK LFERIAPSTY RVRAAFRKDP ADAEAILSAA RKKIQIFENG 840 FLAEEDAEDV EREDAEDVER DEDSECDDVD EDPDVDDFAT LSTENKTSIP SSEEKSCLGI 900 QNICNNVVLN LQNKLEKDFL SIPLSESKDE NCQSTASEQY VAGEYISANN LGQENMEIDE 960 SKSGDSWIQG LTEGEYSDLS VEERLNALVT LIGVANEGNS IRGILEDRME AANALKKQMW 1020 AEAQLDKSRL KEEIINKADF TSPIVGSKVE TLPMSSVVGG NQSPLPNVDE QNMEASPSTA 1080 ENQNLLGLQC IQDHLNSLPA ERTPVVQDFS MGPDNFLIQQ LGYASKRSRS QLKSYIAHRA 1140 EEMYVYRSLP LGQDRRRNRY WQFVASASSS DPGSGRIFVE LHDGNWRLID SEEAFDAILM 1200 SLDARGIRES HLRLMLQKIE TSFKENLRRN TQCANVVAKS GISMKNETDE MNSSPDCPAA 1260 FDSPSSTVCG INLDILETSS SFKIELGRNE AEKRAALNRY QDFQKWMWKE CFNSLTLCAM 1320 KYGKKRCVQL LGICDFCLNT YYSEEFHCLS CHRNFGTSTN GFRVSEHAIQ CEGKRKLDTG 1380 DFRILESSLP LGTRLLKALL ACIEASVPPE ALQSYWMEDL RKTWGVKLNA SSTIEELLQI 1440 LTLFERVLKQ DFLSSKFATT EALLGFSTQS GSALHDFADP KSVPLLPWVP QTTAAVALRL 1500 FELDASIIYA KQAKPDPCED KEIREFIKLP SRYGPVNNVK EVELTELNHV EDMTEKNSAK 1560 LKNTRNSYKR GRGARDQGRG RRWQKKASVS NSDVSRRNVR SNENLIHGLR QQGQKTYGQG 1620 SARGRRTVRR RRVEKRAVDE RSPSHRADTR SPKSIGESPR NMGEEWDDER ISLLHMEGGD 1680 NINNAEAMES DDNAQAVEYD QGNWEIGFAS ASNGWTGDLM EASDEDVDVS EDDNGVEEGG 1740 DEDSEADVDV DVSEGSDGMV KGIGNDEGTE SAVSEDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1779 aa Download sequence Send to blast

MDAASEGDNH NNQNDAHDDN SNSKFGNSSE GLSKPKRQMK TPFQLETLEK AYSLETYPSE  60
ATRVELSEKL GLSDRQLQMW FCHRRLKDKK EVPAKRPRKT AAAMALPESP VDELRAGGEP  120
GSDYGSGSGS SPFGRLEFRN AMTRSVVDDV PVGRRYYESR QSILELRAIA CVEAQLGEPL  180
RDDGPILGIE FDPLPPDAFG APIAAVPEQQ KRSGQSYEGK LYEQRDVKPY KAPRVLREYP  240
FLQDQSGIRS DAFGQVAQSH FHEPMVDGPT ARPSSLVLGN ELLPRVHGVQ GHGSRVRLLS  300
QQDRQGLALS SPPRDDDRVP ERDSLTNVRT NAQFSDHLVV GPDDPFVLSD GKSFHNDAII  360
RKERKRKSEE ASVAREVEAH EIRIRKELEK QDILRRKKVL ASLLANIMNL FCQSEERIRK  420
EMERQDRERR KEEERLLREK QREEERTKRE QRREIERREK FVQKEYLRAE KRRQKEELRK  480
EKEAVRRKAA IEKATARRIA RESMELIEDE QLELMELAAA SKGLSSMIHL DHDSLQNLEL  540
FRDSLSAFPP KSVKLKKPFA IQPWINSEEN IGNLLMVWRF FITFADVLKL WPFTLDEFVQ  600
AFHDYDSRLL GEIHVALLKL IIKDIEDVAR MPSNGLGMNQ NGAANPGGGH PQIVEGAYAW  660
GFDIFNWQQH LNTLTWPEIF RQLALSAGFG PQLRKRSITW SYPHENDEVF TILSFGNHVL  720
VHWVFKLLVQ HSDGHAHISR HRLTPGTVKF AAFHVLSLEG SEGLTVLELA DKIQKSGLRD  780
LTTSKTPEAS ISVALTRDAK LFERIAPSTY RVRAAFRKDP ADAEAILSAA RKKIQIFENG  840
FLAEEDAEDV EREDAEDVER DEDSECDDVD EDPDVDDFAT LSTENKTSIP SSEEKSCLGI  900
QNICNNVVLN LQNKLEKDFL SIPLSESKDE NCQSTASEQY VAGEYISANN LGQENMEIDE  960
SKSGDSWIQG LTEGEYSDLS VEERLNALVT LIGVANEGNS IRGILEDRME AANALKKQMW  1020
AEAQLDKSRL KEEIINKADF TSPIVGSKVE TLPMSSVVGG NQSPLPNVDE QNMEASPSTA  1080
ENQNLLGLQC IQDHLNSLPA ERTPVVQDFS MGPDNFLIQQ LGYASKRSRS QLKSYIAHRA  1140
EEMYVYRSLP LGQDRRRNRY WQFVASASSS DPGSGRIFVE LHDGNWRLID SEEAFDAILM  1200
SLDARGIRES HLRLMLQKIE TSFKENLRRN TQCANVVAKS GISMKNETDE MNSSPDCPAA  1260
FDSPSSTVCG INLDILETSS SFKIELGRNE AEKRAALNRY QDFQKWMWKE CFNSLTLCAM  1320
KYGKKRCVQL LGICDFCLNT YYSEEFHCLS CHRNFGTSTN GFRVSEHAIQ CEGKRKLDTG  1380
DFRILESSLP LGTRLLKALL ACIEASVPPE ALQSYWMEDL RKTWGVKLNA SSTIEELLQI  1440
LTLFERVLKQ DFLSSKFATT EALLGFSTQS GSALHDFADP KSVPLLPWVP QTTAAVALRL  1500
FELDASIIYA KQAKPDPCED KEIREFIKLP SRYGPVNNVK EVELTELNHV EDMTEKNSAK  1560
LKNTRNSYKR GRGARDQGRG RRWQKKASVS NSDVSRRNVR SNENLIHGLR QQGQKTYGQG  1620
SARGRRTVRR RRVEKRAVDE RSPSHRADTR SPKSIGESPR NMGEEWDDER ISLLHMEGGD  1680
NINNAEAMES DDNAQAVEYD QGNWEIGFAS ASNGWTGDLM EASDEDVDVS EDDNGVEEGG  1740
DEDSEADVDV DVSEGSDGMV KGIGNDEGTE SAVSEDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	90	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811588.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2I4DWR4	0.0	A0A2I4DWR4_JUGRE; homeobox-DDT domain protein RLT1 isoform X1
STRING	EMJ15808	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1