PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00020210-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HB-other

Protein Properties

Length: 1158aa MW: 129690 Da PI: 7.0226

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00020210-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41	3.2e-13	6	56	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++ql+ Le+l+ +++yp++e +e+ A+ lgL +qV+ WF +R ++k+ WALNUT_00020210-RA 6 KTPSQLQSLERLYSEDKYPTKEVMEDYAAALGLVYKQVQGWFVEKRRRDKR 56 599*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.896	1	57	IPR001356	Homeobox domain
SMART	SM00389	1.8E-10	1	61	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-11	5	57	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-11	5	56	IPR009057	Homeodomain-like
CDD	cd00086	6.70E-11	5	58	No hit	No description
Pfam	PF00046	1.3E-10	6	56	IPR001356	Homeobox domain
SMART	SM00571	4.4E-10	360	419	IPR018501	DDT domain
PROSITE profile	PS50827	12.115	360	419	IPR018501	DDT domain
Pfam	PF02791	1.6E-9	363	416	IPR018501	DDT domain
Pfam	PF15612	2.5E-10	641	682	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-10	772	845	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1158 aa Download sequence Send to blast
MEMKRKTPSQ LQSLERLYSE DKYPTKEVME DYAAALGLVY KQVQGWFVEK RRRDKRENGF 60 IVPSHSALIK KHPILTRRNG SGSISATKVS KGDLSMRMAE SPSSSIYRRP STAKNKSAKR 120 KKQVFLLQNL LTPDHILKKV FRKDGPPLGS EFDSLPSGPF CSPTDSKNSH PCCLDNQRAD 180 TRRKVCEHAI LSHQGSNEKS APVTKHGIGK GLMTVWRATN PDGGDFPTGI NVSDGEVANI 240 SPISTSMSRK KPLLREKRPR QKVQTNRDEH QKQPDKVKCE LALEGEISQE YLDQVAMLVD 300 DEELELQELQ GGPNPLRCSD HLAANGLHGC SLCKDVLAEF PPNSVKMKQP FCMQPWESSP 360 GIVKKLFKVF HFLYTYAVAV DLCPFTLDEF AQAFHDKDSL LLGKIHVALL KLLISDVQAE 420 LSSGFSPNLS KSCNFLALLH SVENQKVALE FWERSLNPLT WAEILRQVLV AAGFGSKQGA 480 LRREALSREM NLILNYGLRP GTLKCELFKV LSEQGNNGSK VSDLAKSLQI VELNLSGTTE 540 DLESLICSTL SSDITLFEKI SSFAYRLRNN YVAKEIGEFQ SDTEDSGSVE DYPNDSGPCS 600 SSDDLGCGSE NSNIRKIKYM SGRKSPSNML TVYNEIDESH PGEAWLLGLM EGEYSDLSIE 660 EKLNALVALT DLLLAGSSIR VEDPMHAIVE CVPNIHHYGS GAKLKRSSAR QHSLTWSPQA 720 HAGQLHGLKE AYSLLKFHPA DSSVSMARFY QERSSGKGEK EKEVELDLHP MQSVFLGSDR 780 RYNRYWLFLG PCNGYDPGHR RVYFESSEDG HWKVIDTIED FCTLLSALDD RGKREALLIA 840 SLEKRQVSLC QGMSSRMVNS AGTRYLTQSV HSELDMVREN SCSPVSDVDN LSLTGTGKDS 900 LPSSGAVFLD VGKNGEEQEE RWSRLQAFDS WLWNSFYSCL NAVKHGKRSY LDSLAKCESC 960 HDLYWRDEKH CRVCHITFEL DFDLEERYAV HAATCREEED ANIMFPKHKV LSSQIQSLKA 1020 AIHAVESVMP EEALIGAWTK SAHKLWVKRL RRTSSLADIL QVLADFVGAI NVDWLYECSV 1080 QQVSYNVVQE IIVSFTSLPQ TTAAVALWLV KLDSLIAPWL GKSSSRKETR NQCPRVAGTR 1140 CTLLVEIIMQ LGFALEQF

Sequence ? help Back to Top

Protein Sequence Length: 1158 aa Download sequence Send to blast

MEMKRKTPSQ LQSLERLYSE DKYPTKEVME DYAAALGLVY KQVQGWFVEK RRRDKRENGF  60
IVPSHSALIK KHPILTRRNG SGSISATKVS KGDLSMRMAE SPSSSIYRRP STAKNKSAKR  120
KKQVFLLQNL LTPDHILKKV FRKDGPPLGS EFDSLPSGPF CSPTDSKNSH PCCLDNQRAD  180
TRRKVCEHAI LSHQGSNEKS APVTKHGIGK GLMTVWRATN PDGGDFPTGI NVSDGEVANI  240
SPISTSMSRK KPLLREKRPR QKVQTNRDEH QKQPDKVKCE LALEGEISQE YLDQVAMLVD  300
DEELELQELQ GGPNPLRCSD HLAANGLHGC SLCKDVLAEF PPNSVKMKQP FCMQPWESSP  360
GIVKKLFKVF HFLYTYAVAV DLCPFTLDEF AQAFHDKDSL LLGKIHVALL KLLISDVQAE  420
LSSGFSPNLS KSCNFLALLH SVENQKVALE FWERSLNPLT WAEILRQVLV AAGFGSKQGA  480
LRREALSREM NLILNYGLRP GTLKCELFKV LSEQGNNGSK VSDLAKSLQI VELNLSGTTE  540
DLESLICSTL SSDITLFEKI SSFAYRLRNN YVAKEIGEFQ SDTEDSGSVE DYPNDSGPCS  600
SSDDLGCGSE NSNIRKIKYM SGRKSPSNML TVYNEIDESH PGEAWLLGLM EGEYSDLSIE  660
EKLNALVALT DLLLAGSSIR VEDPMHAIVE CVPNIHHYGS GAKLKRSSAR QHSLTWSPQA  720
HAGQLHGLKE AYSLLKFHPA DSSVSMARFY QERSSGKGEK EKEVELDLHP MQSVFLGSDR  780
RYNRYWLFLG PCNGYDPGHR RVYFESSEDG HWKVIDTIED FCTLLSALDD RGKREALLIA  840
SLEKRQVSLC QGMSSRMVNS AGTRYLTQSV HSELDMVREN SCSPVSDVDN LSLTGTGKDS  900
LPSSGAVFLD VGKNGEEQEE RWSRLQAFDS WLWNSFYSCL NAVKHGKRSY LDSLAKCESC  960
HDLYWRDEKH CRVCHITFEL DFDLEERYAV HAATCREEED ANIMFPKHKV LSSQIQSLKA  1020
AIHAVESVMP EEALIGAWTK SAHKLWVKRL RRTSSLADIL QVLADFVGAI NVDWLYECSV  1080
QQVSYNVVQE IIVSFTSLPQ TTAAVALWLV KLDSLIAPWL GKSSSRKETR NQCPRVAGTR  1140
CTLLVEIIMQ LGFALEQF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018838031.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A2I4G2B5	0.0	A0A2I4G2B5_JUGRE; homeobox-DDT domain protein RLT3 isoform X2
STRING	XP_008228086.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6118	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator