PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020277-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 366aa    MW: 40930.4 Da    PI: 8.3235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020277-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07210232123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F+r  nL+ H+r H
  WALNUT_00020277-RA 210 HYCQVCGKGFKRDANLRMHMRAH 232
                         68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.35E-6208236No hitNo description
SMARTSM003550.0034210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653210237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-6210236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SMARTSM0035576265298IPR015880Zinc finger, C2H2-like
SMARTSM0035533303325IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLSATISCYP DVPQGLLQIS SMTEDIISSS LEVNSGTDSH PSSLLSNFSI LKDKVFQVES  60
LISILNSLNH SETELASSLA AVGMDTVIQE IIMTTSSMMF ICQQMALGFT SAGTSNHELQ  120
QQQQCRQNRF PQSNFGSNRD GIVIQEGEQG FYSGYMVEWN DENYNNSSNK DENRSVITGK  180
NKKAGDGQRL SLEYDVIQLE AADILAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTIA  240
ALGNPMKNGS VLGNRKGLRE LPTKYSCPQE GCRWNQKHAK FQPLKSIVCV KNHYKRSHCP  300
KIYVCKRCNH KQFSVLSDLR THEKHCGDQK WQCSCGTTFS RKDKLMGHVA LFVGHTPASS  360
SFINLA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841940.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT241e-104STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2I4GDI70.0A0A2I4GDI7_JUGRE; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGEOY336791e-142(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein