PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020376-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 601aa    MW: 67173.4 Da    PI: 8.3497
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020376-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-193682148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++l+ av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  WALNUT_00020376-RA 36 KGGWTEEEDKILAVAVQKFNGKNWKKIAECVP-DRTDVQCLHRWQKVL 82
                        688*****************************.************986 PP
2Myb_DNA-binding55.61.2e-1788134148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W +eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l
  WALNUT_00020376-RA  88 KGPWNKEEDDLIIELVAKQGKKKWSEIAKFLP-GRIGKQCRERWHNHL 134
                         79******************************.*************97 PP
3Myb_DNA-binding48.91.5e-15141182245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +WT+eE+++l++ ++ +G++ W+ Ia+ +  gRt++++k++w+
  WALNUT_00020376-RA 141 TAWTKEEELILIKTHQTYGNK-WAEIAKFLD-GRTENSIKNHWN 182
                         68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1663182IPR017930Myb domain
SuperFamilySSF466893.38E-173491IPR009057Homeodomain-like
SMARTSM007178.8E-163584IPR001005SANT/Myb domain
PfamPF002495.9E-173682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-223894IPR009057Homeodomain-like
CDDcd001679.02E-143982No hitNo description
PROSITE profilePS5129431.1883138IPR017930Myb domain
SuperFamilySSF466891.65E-3085181IPR009057Homeodomain-like
SMARTSM007171.9E-1787136IPR001005SANT/Myb domain
CDDcd001674.65E-1590134No hitNo description
PfamPF139216.3E-1791148No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2795141IPR009057Homeodomain-like
PROSITE profilePS5129419.924139189IPR017930Myb domain
SMARTSM007171.0E-14139187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-22142189IPR009057Homeodomain-like
CDDcd001672.79E-11142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVSTTPPLSS SSCDDAVPKP VSFQGRITGP TRRSTKGGWT EEEDKILAVA VQKFNGKNWK  60
KIAECVPDRT DVQCLHRWQK VLNPDLVKGP WNKEEDDLII ELVAKQGKKK WSEIAKFLPG  120
RIGKQCRERW HNHLNPDIKK TAWTKEEELI LIKTHQTYGN KWAEIAKFLD GRTENSIKNH  180
WNCSVRKKLE SINLASGSGP YSHKAKAECI KSEEVKESCD QKLNFEGSAD TCSLDLILDM  240
RESNLQPSNK VDCRSLKGGE NDLTKPRCRT NLHDGDAASC GLSGKQCQER ANNGNTFREP  300
YHAAIKTNEL CYTSSSHQVK FKCLDEQVHE PDKSVNPLPS GGLSRPLQLS LCTRSDVSGC  360
NILTSNFLHG LAFPAAARRL HESSYVPQHN VCYADYFENR NSKLCGQNKD PLSSRMACET  420
YEESTVFRAP ANLEDSNSSL CYKPLFQKDL NSLLKTGTFP STDSYIQTAS SPVSFNTPSS  480
HNTGITVDGS SPESILRSAA RSFINTPSII RKRRLKISRK FDNLNQKDGV CSLEENRDNS  540
DNSHHLLSCD RHDNNGVPSN EKQLFLPPPK SQKLGSSAAV KSIEKCLEHA FDSEWASTNI  600
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-64361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-64361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813885.10.0PREDICTED: myb-related protein 3R-1-like isoform X1
TrEMBLA0A2I4E3B00.0A0A2I4E3B0_JUGRE; myb-related protein 3R-1-like isoform X1
STRINGXP_008232807.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.14e-87Homeodomain-like protein