PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020404-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 254aa    MW: 28437.4 Da    PI: 7.5995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020404-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1385131354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  WALNUT_00020404-RA  85 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 131
                         58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85382131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-1385134No hitNo description
PfamPF000107.5E-1185131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1486144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1486140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-5168231No hitNo description
CDDcd048736.50E-4168232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPIGSVEDPN HNHKAEPSMH QPAENQDLYR FITGNGVINV GTYGFPANCE FPGMQSFSCS  60
SSYYPLGVSG LADTPPQDRA LAALKNHKEA EKRRRERINS HLDKLRSLLP CNSKTDKASL  120
LAKVVQRVKE LKEQTSEITE LETFPSETDE ITVLSGDHSD GRLIFKASLC CEDRTDLIPD  180
LIEILKSLHL TTLRAEMATL GGRIRNVLVV AADKDHSIES VHFLQNALKS LLERSSSSDR  240
SKRRRIILDR KMIM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241245KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810563.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806743e-85BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2I4DTT80.0A0A2I4DTT8_JUGRE; transcription factor bHLH106-like
STRINGEOY088091e-131(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]