PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00020424-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 451aa MW: 50502.5 Da PI: 6.5737

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00020424-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.7e-22	160	247	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+ YA GFs+rk+ +ks+ +g +++r+++C+++g+r +++ + ++++r+etrtgC a++++ ++ +gk++vt++e++HnHe++ WALNUT_00020424-RA 160 CYSIYAVIEGFSIRKDFVNKSRISGAVVSRRYTCYRQGYRPAKHTG-NMRKSSRQETRTGCLAHMTIARQPNGKFRVTHFETKHNHEFV 247 79*************************************99999.99999*********************************97 PP
2	FAR1	92.5	5.3e-29	295	383	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn+YA ++GFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ ++ +r+r+etr+gC a+l+++++ dgk++vt++e++HnHel+ WALNUT_00020424-RA 295 KFYNTYAGQIGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-SNVKRPRKETRIGCLAQLVISRQPDGKYRVTHFEEKHNHELV 383 6*****************************************999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-20	160	247	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.0E-26	295	383	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MNSSEPGITT HAPEEDIENE CQRSTVLASD MGQASQSPKS SFVEQILVVN GDEREYQSPN 60 GSSVDKSQVV IDSEHDFETP SVSSFDKSQG EIDGEASLTP DDSSVNKFDM EVVGEFECQS 120 PDSVSVDVSG VGINVKGEND EYVAPKVGME FESEEDAYKC YSIYAVIEGF SIRKDFVNKS 180 RISGAVVSRR YTCYRQGYRP AKHTGNMRKS SRQETRTGCL AHMTIARQPN GKFRVTHFET 240 KHNHEFVTPS TAHMLPSQKR LDFVQAVEAD LANHPGMDVV PKLGMGFDSE DHAYKFYNTY 300 AGQIGFSVRK DYVNRSKIDG AVASRRFTCF REGFRQKDKR DSNVKRPRKE TRIGCLAQLV 360 ISRQPDGKYR VTHFEEKHNH ELVAACRVRM LRSQKRLAVA QVTDDNLVSG SKIQPKSAIE 420 LLFELFAMAP SFDLSISISF EKIQCKEGAV C

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MNSSEPGITT HAPEEDIENE CQRSTVLASD MGQASQSPKS SFVEQILVVN GDEREYQSPN  60
GSSVDKSQVV IDSEHDFETP SVSSFDKSQG EIDGEASLTP DDSSVNKFDM EVVGEFECQS  120
PDSVSVDVSG VGINVKGEND EYVAPKVGME FESEEDAYKC YSIYAVIEGF SIRKDFVNKS  180
RISGAVVSRR YTCYRQGYRP AKHTGNMRKS SRQETRTGCL AHMTIARQPN GKFRVTHFET  240
KHNHEFVTPS TAHMLPSQKR LDFVQAVEAD LANHPGMDVV PKLGMGFDSE DHAYKFYNTY  300
AGQIGFSVRK DYVNRSKIDG AVASRRFTCF REGFRQKDKR DSNVKRPRKE TRIGCLAQLV  360
ISRQPDGKYR VTHFEEKHNH ELVAACRVRM LRSQKRLAVA QVTDDNLVSG SKIQPKSAIE  420
LLFELFAMAP SFDLSISISF EKIQCKEGAV C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814330.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4E4L0	0.0	A0A2I4E4L0_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	EOY02643	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-31	FAR1-related sequence 7