PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00020462-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SRS

Protein Properties

Length: 209aa MW: 23175.2 Da PI: 8.9844

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00020462-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	171	6.3e-53	13	146	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 +++CqdCGnqakk+C++ RCRtCC+++gf+C+thv+stW+p ++rr+rqqqlaaa + + + +++kr+ ++ +ss+ WALNUT_00020462-RA 13 SSRCQDCGNQAKKECVYLRCRTCCRNKGFQCQTHVRSTWIPLYRRRQRQQQLAAAVLPQHLRVRGHNPKRQS--------QI----TSSG- 90 579************************************************9977665433333333222........22....2222. PP DUF702 96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +e +++P+ev+ +a f c+r++sv+d +e+++aYqtavsigGh+fkGiLydqG+++ WALNUT_00020462-RA 91 ----SEEANFPAEVHLRAAFFCIRLGSVNDaAEDQYAYQTAVSIGGHLFKGILYDQGPDH 146 ....34567*****************88999*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-51	13	145	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-25	16	57	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.4E-22	96	144	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MLMQGGIGGS FTSSRCQDCG NQAKKECVYL RCRTCCRNKG FQCQTHVRST WIPLYRRRQR 60 QQQLAAAVLP QHLRVRGHNP KRQSQITSSG SEEANFPAEV HLRAAFFCIR LGSVNDAAED 120 QYAYQTAVSI GGHLFKGILY DQGPDHESNC TAGEGSSLAP QPPKLLNAAD LANITTNPAY 180 TETLHPPIFP FPFTTTFMPG TQFLQRPKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018840329.1	1e-157	PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A2I4G8V2	1e-155	A0A2I4G8V2_JUGRE; protein SHI RELATED SEQUENCE 1-like
STRING	XP_008236969.1	2e-66	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-43	Lateral root primordium (LRP) protein-related