PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020625-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 452aa    MW: 50608.6 Da    PI: 7.4759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020625-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19214264256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  WALNUT_00020625-RA 214 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 264
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.24E-33213273No hitNo description
SuperFamilySSF541711.18E-22214272IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-32214272IPR001471AP2/ERF domain
SMARTSM003802.7E-40214277IPR001471AP2/ERF domain
PROSITE profilePS5103223.024214271IPR001471AP2/ERF domain
PfamPF008472.7E-12215264IPR001471AP2/ERF domain
PRINTSPR003678.0E-11215226IPR001471AP2/ERF domain
PRINTSPR003678.0E-11237253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAAGNHGKSK LGVDESLRIS QDWEIDNGKG PEFSSERRRW KSVFDEASMS SRPLKKIRSP  60
ERHNPIHSSA SLAHQPHPFS IPSSTSSVTL CPPPPPSRLA FPFAYDGSQQ SFHFPHQFRT  120
TALPMYRPPP LQPLQNQQEM ISFASKQHHS VAYPQFLGGD VALMHLQQQQ QILQYWSDAL  180
NLSPRGRMMM MNRLGPDGRP LFRPPVQPLH TTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  240
LGTFDTAEDA AMAYDREAFK LRGENAKLNF PELFLNKDKA ASTAPSSTTS SPPTPNESSR  300
SSRYSKQPKQ APKSLDLQAL DMEIRPPTPP QPQTVEDNAH SGLGSSEEAQ AISAGADVGE  360
GVSQSRELVW GDMQEAWFNA IAAEGWGPGS PVWDDLDTNN NFLLQTQIPF AIPNHLEFND  420
CDLQSQQETL ASASSSSSSS CPMKPFFWKD QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20213271160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20213271463ATERF1
3gcc_A5e-20213271463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838445.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2I4G3K20.0A0A2I4G3K2_JUGRE; ethylene-responsive transcription factor ERF054-like
STRINGEOX993821e-180(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-58ERF family protein