PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020845-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 261aa    MW: 28254.2 Da    PI: 7.7793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020845-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002485107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  WALNUT_00020845-RA  85 YKCTVCDKAFPSYQALGGHKASH 107
                         9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.006785107IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-1385109IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.26385112IPR007087Zinc finger, C2H2
SuperFamilySSF576678.95E-1085107No hitNo description
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576678.95E-10138165No hitNo description
PfamPF139121.6E-13142167IPR007087Zinc finger, C2H2
SMARTSM003550.18143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALEALNSPT TATPFNYELD DVERQYAEPW TKRKRSKRPG RVETEEEYLA LCLIMLARGG  60
TTSDITSQTQ QKQSPPQPPA LKLSYKCTVC DKAFPSYQAL GGHKASHRKS SEAATAKITA  120
NDNNHPSTSS SSGTAAGTSG KTHECSICHK TFPTGQALGG HKRCHYDGGN SHSNTNANAN  180
TNTNTNTNTN ANSGVTFSEG GGSSLCQSHR GFDLNLPALP EFWLDRKSSQ LCAEQEVESP  240
LPTKKPRLFL MSPDDVVSFQ D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852122.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A2I4H7J40.0A0A2I4H7J4_JUGRE; zinc finger protein ZAT10-like
STRINGXP_008236445.13e-83(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-53salt tolerance zinc finger