PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020872-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 390aa    MW: 44338.4 Da    PI: 4.7853
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020872-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.3e-35141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sws+ ++sfvv+++ efa+ +Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +
  WALNUT_00020872-RA  14 FLSKTYEMVDDPSTDSVVSWSQCNKSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFMRGQPH 95 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  WALNUT_00020872-RA  96 LLKNIHRRKP 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.45E-369103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDDSQGGSNS LPPFLSKTYE MVDDPSTDSV VSWSQCNKSF VVWNPPEFAR VLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFM RGQPHLLKNI HRRKPVHSHS MQSLQGQGSA  120
SPLSESERQS LKEEIERLKN DRERLLLESQ RNEEERRVYE LQIQRFKERL QQIELRQQNM  180
MSSVAGVLRK PGLALNLVTQ LENHDRKRRL PRISYFRDEA DIEDDQMEAS QSLPRESGAS  240
ASTLTLKMDP FEHLESSLSF WESVVHDVGQ TCVEQNSSVV LDESTSCADS PAISGLQLNV  300
DIRPKSPGID MNSEPATVAA PDSVEPVTSE EQAVVNAATV PTGVNDVFWE QFLTENPGSS  360
EAQEFQSERK ESMAERMKPN LAIMANFSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24710322129Heat shock factor protein 1
5d5v_B1e-24710322129Heat shock factor protein 1
5d5v_D1e-24710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805848.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-117HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2I4DFD20.0A0A2I4DFD2_JUGRE; heat stress transcription factor A-4c-like
STRINGPOPTR_0011s06820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-119heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]