PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020953-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 1534aa    MW: 169253 Da    PI: 5.765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020953-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0615131534426
                          ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                          + C+ f+++G+Ck G++C++ H+
  WALNUT_00020953-RA 1513 RVCK-FYESGYCKKGASCSYLHP 1534
                          7899.8999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-894169IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.1E-9118177IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.573122188IPR019787Zinc finger, PHD-finger
CDDcd155681.08E-18124169No hitNo description
SMARTSM002494.0E-7124170IPR001965Zinc finger, PHD-type
PROSITE patternPS013590125185IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0024343428IPR019835SWIB domain
Gene3DG3DSA:1.10.245.104.0E-24343429IPR003121SWIB/MDM2 domain
SuperFamilySSF475927.85E-19346424IPR003121SWIB/MDM2 domain
PfamPF022014.0E-12350423IPR003121SWIB/MDM2 domain
SMARTSM007191.0E-43485595IPR004343Plus-3 domain
PROSITE profilePS5136024.264485618IPR004343Plus-3 domain
SuperFamilySSF1590421.44E-29486614IPR004343Plus-3 domain
PfamPF031264.3E-22490594IPR004343Plus-3 domain
SuperFamilySSF552779.29E-15865920IPR003169GYF domain
CDDcd000729.82E-17867922No hitNo description
PROSITE profilePS5082914.362867921IPR003169GYF domain
SMARTSM004443.8E-17868923IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.1E-16869921IPR003169GYF domain
PfamPF022137.4E-11870912IPR003169GYF domain
PROSITE profilePS5010314.71815091534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-615091533IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-415121534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-415131533IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1534 aa     Download sequence    Send to blast
MEGTHISQQQ ASGHYRPCLQ DGRVEQGGFD DSVPTVDLMS VDQREAMRDM DDSQLVGAPE  60
AGVAAKEDVP MAEVEMLMMM KKKLEANPVQ TMVAKRKRGR PPRGLAKPIK TTPPVRKKKD  120
EEDVCFICFD GGSLVLCDRR GCPKAYHPAC IKRDESFFKS RAKWNCGWHI CSNCQKAAHY  180
MCYTCTYSLC KGCIKDADYL SVRGNNGFCR MCMRTVMLIE NFQGNTEVVY SLNHPQVDFD  240
DKSSWEYLFK MYWIFLKGKL SLTLDELTRA KNPWKEAYAI AQKGGSSGEL YDGIDEKASS  300
FNNSCAALQT NNSRKRKAKE LPIFNKDSAT KEKSGSDKDP HLLEGTIWAS KELLEFVAHM  360
KNGDTSVLSQ FDVQALLLEY IRKNNLRDSR RKCQIVCDMR LINLFGKTRI GHLEMLKLLE  420
SHFLITKSSS ADYILRAGVV NDTAGQVEAD GNYDNQLLMG SDERHKTCRK TDDGGSRANS  480
DVFAAIDVHN INLIYLRRNL MESLLDDADK FHDKVVGSIV RIRIPDIGQK QEKCRLVQVA  540
GTNKVAKPYK LGERNTDLML EILNLDKKEV ISIDEVSNQE FSEDECKHLR QSMKCGLIKR  600
LTVGEIQAKA MTLQPVRVND GLEAEIIRLN HLRDLASEKG HEKEYPFCHH LLMEFSIPKI  660
FHVVKKNGTF LSSIPLPRCT FRECVERIQL LSSPEERQRR LLEIIEVHID PKMDPSYESE  720
DNVGELDEKK QDDHARTEVS GYGRKESDPI SAQRGDYVLN DTGSRAQKNL AKSCKQSREA  780
GMTSSSNKGG ATWLHEMMNE SSWKERKASG INNWNTPENP INTSGSLAIG CNSQAVLKSE  840
ISGVASEISA LALSTGADKF ADSFETDKVW HYGDPNGIIQ GPFFMSQLRK WNTNGHFPPD  900
LRIWRINEMQ DNSVLLTEAL SGKFHEAKMV LNNCNLLSED VGLATDYRDN NGDGGLSESM  960
NASQIDNKEE EGSLKPMQDD SSGNDEFLRS NGWVSSQSSW TTPADLANSN ERKNGAFKPG  1020
WDSSKGNSSC PDQPQACSSS LVPPTFSGKS FESVSYPVRE VYGGECTSVQ ENGNCNSHSP  1080
ADDQIKNEQG CENRSDSEGH SGQSSGQSWR PPPVNVSSNG WVSSSDFISL VKSLETTEQT  1140
QEIDFQEMPS PTIKQSNEDL EAQAAKNKQA ASSGFPVQDA GPSRSTASSL VGGGAQMSEV  1200
ADGMGPYSPT TAKPSIGEWG SSLVSASSLI PTEIDHAATP SSISDQLTHS SPSHPTSNAS  1260
SWQAIVTEPT EFCSLADESV SDLLAEVEAM EAMVSIEDSK HDCMSPLDEF SPGLDPGKSD  1320
ALSSTGDLQA PSQSTVTDEP DGTRHADILD PQKRSSRHSS TIVEVEGDAK PTDISVKESR  1380
SEIHPPSPST ESWDISTRDA TWRVGSERTA NSWGLAQGSP NLGWGGSNQS NTNVGLGPVQ  1440
MAAQNSIGMN FGASAGNPGF YRPRIGGDRF SGPRDRGFQS RDLGYGRGRG MWNRQPLYIG  1500
GNESPFRPPK SHRVCKFYES GYCKKGASCS YLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A9e-15106191381Histone-lysine N-methyltransferase NSD3
4gnd_C9e-15106191381Histone-lysine N-methyltransferase NSD3
4gne_A9e-15106191381Histone-lysine N-methyltransferase NSD3
4gnf_A9e-15106191381Histone-lysine N-methyltransferase NSD3
4gng_A9e-15106191381Histone-lysine N-methyltransferase NSD3
4gng_D9e-15106191381Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18097KKKLEANPVQTMVAKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847137.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A2I4GTB50.0A0A2I4GTB5_JUGRE; zinc finger CCCH domain-containing protein 44-like
STRINGXP_008241786.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding