PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021256-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 756aa    MW: 87191.1 Da    PI: 7.6057
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021256-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.91.3e-2637122291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++++gkw+++++++eHnH+l p
  WALNUT_00021256-RA  37 FYKEYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIYSFVKEHNHDLLP 122
                         9***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2437122IPR004330FAR1 DNA binding domain
PfamPF105515.5E-30235328IPR018289MULE transposase domain
PROSITE profilePS5096610.596515551IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-8521549IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-7526553IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MNIPTTTMDS NIIMENASII EPRDDMEFDS HEAAYLFYKE YAKSVGFGTA KLSSRRSRAS  60
REFIDAKFSC IRYGNKQQSD DAINPRPSPK IGCKASMHVK RRQNGKWYIY SFVKEHNHDL  120
LPAQVHFFRS HRNAELLKND VRVRRRKSLP AVSKLFSAYQ NADCLESYMK SQHDKGRSLV  180
LEPGDAQILL EHFMHMQEQN PKFFYAVDLN EEHRLRNVFW VDAKGMEDYT TFGDVVSFDT  240
TYFTNKYKIP LVLFIGVNHH IQPTLLGCAL IADETAYTFV WLLQTWFIAM EERAPRVILT  300
DQNNAIKVAI AAVFPGTRHC YCLWHVLEKI PRQLEFLCMW NDSFMLKFTK CVYKSWTEEE  360
FEKRWWKMLD RFSLREVDWV QSLYEDRTHW VPTFMKDVSF AGLSTASRSE SLNSLFDKYV  420
QGETSMREFI ERYRVILEDR YEEEAKANFD AWHETPELKS PSPFEKQMSQ VYTHEIFKKF  480
QVEVLGAAAC HLKKENEDEM TTTYTVKDFE DNQNYIVEWN ESKSDILCSC RSFEYKGYLC  540
RHAIVVLQMS GVFSIPSKYV LQRWTNAALS RHGIGERLDE VQSKVRRYND LCRRAIILGE  600
EGSLSQESYN IALCAIKEAL KQCANVNNSV ENDSRTMTLA THPVCGDEVN QCGNVSNVVA  660
PHPKVTNANK ASRRAGAGKG VASKENSSSK KGKVPQPEAV GMGIQDSLHQ MEMSGMRPSH  720
LHNVVPAQLH NMVPPMFHNI TSTHVATSLH ENGLPR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807478.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2I4DK140.0A0A2I4DK14_JUGRE; protein FAR1-RELATED SEQUENCE 4 isoform X2
STRINGXP_008234547.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]