PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00021290-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 26838 Da PI: 8.1939

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00021290-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k WALNUT_00021290-RA 63 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 116 56779************************************************9 PP
2	HD-ZIP_I/II	119.4	1.9e-38	62	153	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+++q+ +LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+ yd +++e+++L++ev +L++ l WALNUT_00021290-RA 62 EKKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQDYDVISRERQKLQEEVMKLKAML 152 69**************************************************************************************887 PP HD-ZIP_I/II 92 k 92 + WALNUT_00021290-RA 153 R 153 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-19	47	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	58	118	IPR001356	Homeobox domain
SMART	SM00389	5.1E-18	61	122	IPR001356	Homeobox domain
CDD	cd00086	1.41E-16	63	119	No hit	No description
Pfam	PF00046	9.4E-17	63	116	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-21	64	125	IPR009057	Homeodomain-like
PRINTS	PR00031	3.7E-5	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.7E-5	98	114	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-8	118	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDWNGSLIRP FVTRPESSLS FLYNYNYDHF PGMEVKHPAV VDSAHGMVPT MDKNSNYGSC 60 QEKKKRLTSD QLDSLERSFQ EEIKLDPDRK MKLSKELGLQ PRQIAVWFQN RRARWKAKQL 120 EHLYDALKQD YDVISRERQK LQEEVMKLKA MLRSEQQAGG RKQAGSTGYT EISGEETVES 180 TSIAINGSNK TRSGGGGGSA SQHHQINADC NYLFNVEEYN PLSPPYWPGG LPSYPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836200.1	1e-179	PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
Refseq	XP_018836201.1	1e-179	PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
Swissprot	Q9LZR0	6e-52	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2I4FX26	1e-177	A0A2I4FX26_JUGRE; homeobox-leucine zipper protein ATHB-22-like isoform X1
STRING	EOY08075	1e-116	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-54	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]