PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00021307-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 63aa MW: 7317.59 Da PI: 11.5161

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00021307-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.1	4.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien ++rqvtf+kRr g++KK +ELSvLCda++ +iifss+gkl+ey+s WALNUT_00021307-RA 9 SRIENRTRRQVTFAKRRVGLIKKTHELSVLCDAQIGLIIFSSNGKLFEYCS 59 59***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.38	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.36E-27	2	60	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MGRRKMSISR IENRTRRQVT FAKRRVGLIK KTHELSVLCD AQIGLIIFSS NGKLFEYCSE 60 TSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-20	1	59	1	59	MEF2C
5f28_B	2e-20	1	59	1	59	MEF2C
5f28_C	2e-20	1	59	1	59	MEF2C
5f28_D	2e-20	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018837324.1	2e-34	PREDICTED: MADS-box protein FBP24 isoform X2
Swissprot	Q9ATE5	3e-27	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A2I4G0A3	5e-33	A0A2I4G0A3_JUGRE; MADS-box protein FBP24 isoform X2
STRING	XP_008346100.1	1e-30	(Malus domestica)
STRING	EMJ13572	4e-30	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.3	6e-27	MIKC_MADS family protein

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]