PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021503-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 162aa    MW: 17437.8 Da    PI: 10.5136
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021503-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19858256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a++ a+++l+g+
  WALNUT_00021503-RA  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDGAARSLRGA 58
                        69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.878865IPR001471AP2/ERF domain
CDDcd000181.80E-28866No hitNo description
SuperFamilySSF541711.7E-21866IPR016177DNA-binding domain
SMARTSM003808.9E-34871IPR001471AP2/ERF domain
PfamPF008475.0E-12857IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-31865IPR001471AP2/ERF domain
PRINTSPR003673.8E-10920IPR001471AP2/ERF domain
PRINTSPR003673.8E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MASAREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PVEAALAYDG AARSLRGAKA  60
KTNFPAPVTA GLPLDLNLPS PGHWNSQSGR LALGEFLQPG HVLNDMSGGV QLDSSSPHRR  120
EALVTVAAGV APLPESSATA SFLGLVRRGL PVDLNEPPPL WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21471169ATERF1
3gcc_A1e-21471169ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810371.11e-113PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID65e-42ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A2I4DTA31e-112A0A2I4DTA3_JUGRE; ethylene-responsive transcription factor 12-like
STRINGVIT_10s0003g00130.t011e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-44ERF domain protein 12