PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00021544-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 255aa MW: 27457.7 Da PI: 7.7965

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00021544-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.6e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl WALNUT_00021544-RA 46 KQRLRWTSDLHDRFVDAISQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.61	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	45	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-17	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	5.4E-8	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-25	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MTSLVPHKGQ GGGGEPVSTG AGVSGGCATV VIKNSTPAAS AGGTGKQRLR WTSDLHDRFV 60 DAISQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPGD GKGFNDEKKS 120 SGDSLSATDS SPGMQINEAL RMQMEVQKRL HEQLEVQRQL QMRIEAQGKY LQKIIEEQQK 180 IGGAPEASET SALDDDKQKT SHSESPGDDS AGPSSPQKKQ MVDDGLTVGL ASSATPKRDQ 240 NKEFVNHWDQ ELLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814671.1	0.0	PREDICTED: myb family transcription factor PHL7-like isoform X3
Swissprot	Q9SJW0	1e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2I4E5J3	0.0	A0A2I4E5J3_JUGRE; myb family transcription factor PHL7-like isoform X3
STRING	XP_008392505.1	1e-115	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-67	G2-like family protein