PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021564-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARR-B
Protein Properties Length: 558aa    MW: 61589.5 Da    PI: 6.3003
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021564-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27317371156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k +++Wt+eLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  WALNUT_00021564-RA 317 KMKIDWTQELHKKFVRAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                         5689*****************.********************************96 PP
2Response_reg25.85.4e-10201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+ d + + +  +r+ le  +y +v+++ +  eal+ + +k   +++ ++ +  ++ +G+  +k +++++ ++p i+ +     +++ ++
  WALNUT_00021564-RA  20 VLLLDGDSSSAAEIRSKLEAMDY-IVTTFCNENEALTAIVNKPesFHVAIVEVGTSDNHGS--VKFLETAK-DVPTIMTSNVHCLSTMMKC 106
                         78888899999999*********.***************666555*****99888887775..67787777.9*****999999******* PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         + +Ga +fl Kp ++++l++
  WALNUT_00021564-RA 107 IALGAVEFLRKPLSEDKLRN 126
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-1416136No hitNo description
PROSITE profilePS5011019.90319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.88E-621131No hitNo description
PROSITE profilePS5129413.787314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-26315373IPR009057Homeodomain-like
SuperFamilySSF466892.78E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24317372IPR006447Myb domain, plants
PfamPF002492.9E-7322369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLRV LLLDGDSSSA AEIRSKLEAM DYIVTTFCNE NEALTAIVNK  60
PESFHVAIVE VGTSDNHGSV KFLETAKDVP TIMTSNVHCL STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG SILCESLKPV KESVASMLQL PLENGELNNK ISSETKNGSL  180
VYENDHEHSG GSDKYPAPST PQLKQGARLL DDGDCQDQTN CSTEKDNGEQ DGESKSVETT  240
CGDSIAEGTL QDGKPQTQHE CLIKEDEESA DGFKSDGKVS PHQHNKDNLG NIIGGGAEIP  300
SKPSGFNSSV TRANRKKMKI DWTQELHKKF VRAVEQLGID QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HKRHILPKEE ELRWPHARDA MQRSYYPHRP VMAIPSYHSS HTLSMPPVYP  420
MWGPPGSNST GVQMWGTGYP AWQPTDNWNW KPYPGMAADA WGCPVMTPPH CAYPSFPQDT  480
SGIHHAGAVD ISPGMTQNSF DLYPADEVID KVVKEAISKP WLPLPLGLKP PSTESVLTEL  540
SRQGISTIPP HINGSHPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16315370358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805697.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-147APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2I4DEY80.0A0A2I4DEY8_JUGRE; two-component response regulator-like APRR2 isoform X1
STRINGVIT_02s0012g00570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-150ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]