PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021598-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 363aa    MW: 41131.1 Da    PI: 6.5055
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021598-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092903242155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++++  LA+++gL+++q+ +WF N+R ++
  WALNUT_00021598-RA 290 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 324
                         569*****************************885 PP
2ELK41.13.7e-14244265122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK qLlrKYsgyLgsLkqEF+
  WALNUT_00021598-RA 244 ELKGQLLRKYSGYLGSLKQEFM 265
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.8E-19101145IPR005540KNOX1
PfamPF037901.4E-20104141IPR005540KNOX1
SMARTSM012562.7E-24150201IPR005541KNOX2
PfamPF037917.2E-21153200IPR005541KNOX2
PROSITE profilePS5121311.174244264IPR005539ELK domain
PfamPF037896.0E-11244265IPR005539ELK domain
SMARTSM011882.8E-8244265IPR005539ELK domain
PROSITE profilePS5007112.827264327IPR001356Homeobox domain
SuperFamilySSF466893.21E-19266339IPR009057Homeodomain-like
SMARTSM003899.4E-13266331IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-28269329IPR009057Homeodomain-like
CDDcd000862.77E-12276328No hitNo description
PfamPF059206.5E-17284323IPR008422Homeobox KN domain
PROSITE patternPS000270302325IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSGSNGTSC MMSFGENSYG LCPVMMMPLM SSHQSHHHHN PNADANSLIP LPPTNNHDQN  60
RNRNTDNSSA FFLHDQTNNS NTGCYFMESN TNMNNHESSS SAEKVKIMAH PHYQRLLAAY  120
VNCQKVGAPP EVVARLEETC ASAATMGHPG TGSIGEDPAL DQFMEAYCEM LTKYEQELSK  180
PYKEAVLFLQ RIECQFKALT VSSSDSATRY LLSACGEAVD RSGSSEEEVD LNNNFIDPHA  240
EDRELKGQLL RKYSGYLGSL KQEFMKKKKK GKLPKEARQQ LLDWWSRHYK WPYPSESQKL  300
ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVMDAAH QHYYMDNVLG NPFPMDISPT  360
SLL
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808307.10.0PREDICTED: homeobox protein SBH1-like
RefseqXP_018808309.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-153HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2I4DMD30.0A0A2I4DMD3_JUGRE; homeobox protein SBH1-like
STRINGEOY288070.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-133KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]