PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00021724-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 856aa MW: 95713.8 Da PI: 4.7223

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00021724-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.2e-09	796	850	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg...kgRtlkqcksrwqky 47 + +WT+eE+e+l+++v+++ + Wk+I + g Rt ++k++w+++ WALNUT_00021724-RA 796 KVPWTAEEEEILKEGVQKFSNTndrniPWKKILEFGGdvlHIRTTVDLKDKWRNL 850 579**********************************989*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	6.42E-10	469	520	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50016	8.716	469	518	IPR019787	Zinc finger, PHD-finger
Gene3D	G3DSA:3.30.40.10	3.1E-9	470	518	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00249	1.5E-7	471	516	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	472	515	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	4.0E-12	791	852	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.364	791	851	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.05E-11	793	852	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-6	795	853	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-7	796	850	IPR001005	SANT/Myb domain
CDD	cd11660	1.39E-15	797	852	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MDEASGCASS LAWIWVIEAL ASYKEVDVSI LHDLIEMVPE LPDNLGKNMR EMLALRCLEV 60 LFGPSNGITK DGCSSLASKV GFDMSKSCED VLEHIVQETS LSDLKMAGLE LSNCNAHPFI 120 IHKRACMPKL ALQQLKDSLL DGSHPYVDTL KVRSGLANAG EIVPVYNVKH SALTQRVNKS 180 CLDTQHMGPK GNVMPRIVEG RKKLLENNLC TGILLDSKRK RNTLATENMD EDFHENRNRL 240 DACDDPNINA KRQKQFASSS VQSREVNPVP LNGTESLEFP SERVMLVAGT ESCGLAKDQR 300 GSLEEVRVLG DNHDEHTASM RCGHIADDEF NHIESDIPDV STTMPLDTFG DEPHQKISVD 360 EVGDDREQCA ELRTSSGPLL VKTRGNESQC DYEHQFQLKA PCSASLNGCK QKIIAHEAEE 420 NMDRCCEAGT SSDSEGYHYG NIDVFFEKNE FLSSQATNSY DPSTSWTFQN LCMKCNEGGQ 480 LLVCSTSNCP VMVHENCLGS SPSFDNNGKF YCPFCAYSLS ISEYLVAKKK ASLARKELTL 540 FLGMGLDQKP EELTKTLHRD EDLLVKSREN GYLEERVNGQ TGHDGEHADE VNNFHCRRSV 600 DDKQQAEPSA LCDNVNSVLR EEEPAEITRT LNVLTEEKEG QVNSIQVVRV VEGDNREAAE 660 HDGHNSSCRN TDVVPVNQSH VEEELQQEVL EQQIAYPPDE PVCVHDTHAD GENLSCRNTG 720 VIPGIQRHSK EQIQQEVSEQ QIAEPTEEPV CALDAYAEDI SEEENEKSII SNYSKRVPKQ 780 ERHDTYPASP QLRRKKVPWT AEEEEILKEG VQKFSNTNDR NIPWKKILEF GGDVLHIRTT 840 VDLKDKWRNL CKVGPR

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MDEASGCASS LAWIWVIEAL ASYKEVDVSI LHDLIEMVPE LPDNLGKNMR EMLALRCLEV  60
LFGPSNGITK DGCSSLASKV GFDMSKSCED VLEHIVQETS LSDLKMAGLE LSNCNAHPFI  120
IHKRACMPKL ALQQLKDSLL DGSHPYVDTL KVRSGLANAG EIVPVYNVKH SALTQRVNKS  180
CLDTQHMGPK GNVMPRIVEG RKKLLENNLC TGILLDSKRK RNTLATENMD EDFHENRNRL  240
DACDDPNINA KRQKQFASSS VQSREVNPVP LNGTESLEFP SERVMLVAGT ESCGLAKDQR  300
GSLEEVRVLG DNHDEHTASM RCGHIADDEF NHIESDIPDV STTMPLDTFG DEPHQKISVD  360
EVGDDREQCA ELRTSSGPLL VKTRGNESQC DYEHQFQLKA PCSASLNGCK QKIIAHEAEE  420
NMDRCCEAGT SSDSEGYHYG NIDVFFEKNE FLSSQATNSY DPSTSWTFQN LCMKCNEGGQ  480
LLVCSTSNCP VMVHENCLGS SPSFDNNGKF YCPFCAYSLS ISEYLVAKKK ASLARKELTL  540
FLGMGLDQKP EELTKTLHRD EDLLVKSREN GYLEERVNGQ TGHDGEHADE VNNFHCRRSV  600
DDKQQAEPSA LCDNVNSVLR EEEPAEITRT LNVLTEEKEG QVNSIQVVRV VEGDNREAAE  660
HDGHNSSCRN TDVVPVNQSH VEEELQQEVL EQQIAYPPDE PVCVHDTHAD GENLSCRNTG  720
VIPGIQRHSK EQIQQEVSEQ QIAEPTEEPV CALDAYAEDI SEEENEKSII SNYSKRVPKQ  780
ERHDTYPASP QLRRKKVPWT AEEEEILKEG VQKFSNTNDR NIPWKKILEF GGDVLHIRTT  840
VDLKDKWRNL CKVGPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	220	RKKLLENNLCTGILLDSKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018842345.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
Refseq	XP_018842347.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
Refseq	XP_018842348.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
Refseq	XP_018842349.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
Refseq	XP_018842350.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
Refseq	XP_018842351.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
Refseq	XP_018842352.1	0.0	PREDICTED: uncharacterized protein LOC109007222 isoform X1
TrEMBL	A0A2I4GEM0	0.0	A0A2I4GEM0_JUGRE; uncharacterized protein LOC109007222 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3872	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	3e-08	MYB_related family protein