PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022069-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 249aa    MW: 27626.1 Da    PI: 5.4529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022069-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1867117155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +++Wv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++l+g
  WALNUT_00022069-RA  67 PVYRGVRKRN-NNKWVCEVREP---NKTSRIWLGTYPTAEMAARAHDVAALALRG 117
                         68*****888.8******9998...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1367117IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2068127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-3068127IPR001471AP2/ERF domain
PROSITE profilePS5103221.77368125IPR001471AP2/ERF domain
SMARTSM003803.6E-2668131IPR001471AP2/ERF domain
PRINTSPR003679.5E-86980IPR001471AP2/ERF domain
CDDcd000189.31E-2969127No hitNo description
PRINTSPR003679.5E-891107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQSFSEFSDP HPFVSNPAYI EKSESSPLSD AGSSAPRTTH SDEEVILASS RPKKRAGRRI  60
FKETRHPVYR GVRKRNNNKW VCEVREPNKT SRIWLGTYPT AEMAARAHDV AALALRGRST  120
CLNFADSAWR LHLPGSRDAK EIRRAAAEAA EAFRPVEFGG DCVGDLGKEE VIKQCQENYG  180
SIESCVLEET KTEQENVLYV DEEALFNMRG LLVNMAEGLL LSPPSCLGGE VMGNDMGLDA  240
EVSLWSFTI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848370.10.0PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ939e-68DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2I4GWT80.0A0A2I4GWT8_JUGRE; dehydration-responsive element-binding protein 1A-like
STRINGVIT_02s0025g04460.t015e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-45dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]