PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022204-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YA

Protein Properties

Length: 323aa MW: 35240.9 Da PI: 9.7235

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022204-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99	4.9e-31	155	211	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ ++kl ++ rkpy+heSRh hA+rRpRg+gGrF WALNUT_00022204-RA 155 DGPIYVNAKQYHGIIRRRQSRAKAVLKNKL-TRVRKPYMHESRHLHAMRRPRGCGGRF 211 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.5E-35	153	214	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.943	154	214	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.5E-27	157	211	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.5E-23	157	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.5E-23	188	211	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAAETFYFKQ RQGTVHNPIG QLSAPWWSAI TSPSVYGEAC VQLKPLSMEH PSGGDQLITN 60 NQAARGTEAA ARANTTRFTL FPDNCRSSAD GQKSQVAISL QSALPEYRGC LELGFGQPMI 120 YAKYPYGDQC YGVFPTCGPQ IPGRVMLPLN MTTDDGPIYV NAKQYHGIIR RRQSRAKAVL 180 KNKLTRVRKP YMHESRHLHA MRRPRGCGGR FLNTNILNKR KNGTELNKNG DGQISQATGS 240 QSSEVLQSDS GTLNTSKDAN GSGSNISVSE VTSMFSRGDL DYFPINHLMP SVHSLSGKID 300 GGHGIIMPGK WVAAVDNCCS LKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-17	155	215	2	63	HAPB protein
4g92_A	2e-17	155	215	2	63	HAPB protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809877.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBL	A0A2I4DRV8	0.0	A0A2I4DRV8_JUGRE; nuclear transcription factor Y subunit A-10-like isoform X2
STRING	EOY08507	1e-152	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	2e-65	nuclear factor Y, subunit A10