PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022262-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 162aa    MW: 17587.4 Da    PI: 10.5084
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022262-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-192457134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        C+ C+ttkTplWR gp g+k+LCnaCG++yrk++
  WALNUT_00022262-RA 24 CADCKTTKTPLWRGGPAGPKSLCNACGIRYRKRR 57
                        ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-151870IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-131958No hitNo description
Gene3DG3DSA:3.30.50.109.4E-162257IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.3342454IPR000679Zinc finger, GATA-type
CDDcd002028.78E-132458No hitNo description
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003201.5E-172457IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MTPLLVMIQE SLSEAITAEN KKCCADCKTT KTPLWRGGPA GPKSLCNACG IRYRKRRISM  60
VGLSYGSYRK RDKSHCHGTS SVSTTPTAAD TTTYTAIAVD NGGGGDLSVS LKTKLMALGK  120
DLLLQRSPSV MKKQRWQRRR KLKEEEQAAV SLMALSSGSV FA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848007.11e-109PREDICTED: GATA transcription factor 15-like isoform X2
TrEMBLA0A2I4GVT81e-108A0A2I4GVT8_JUGRE; GATA transcription factor 15-like isoform X2
STRINGPOPTR_0005s02040.12e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-19GATA transcription factor 15