PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022446-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 593aa    MW: 64534.8 Da    PI: 5.0618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022446-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.32.5e-1372265861374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l+la+al+++++ la++++ +m ++a+yf+eALa+r+++    +y    p++  + + s+ l++   f+e++P+l
  WALNUT_00022446-RA 226 LVHTLMACAEAVQQDNLKLADALVKHVELLAASQAGAMGKVATYFAEALARRIYK----IY----PQDCLDASYSDILQM--HFYETCPYL 306
                         689****************************************************....44....444433335555444..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea++++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+f+f+ +v
  WALNUT_00022446-RA 307 KFAHFTANQAILEAFATASKVHVIDFGLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQADNTDALQQVGWKLAQLAEAIGVEFQFRGFV 397
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         a++l+d+++++ +++p+Ea+aVn+v++lh +l++++++++    vL+ +ks++Pk++++veqea+hn++ F+erf+eal+yys+lfdsle 
  WALNUT_00022446-RA 398 ATSLADIDPSMVDIRPDEAVAVNSVFELHPMLARPGAIDK----VLSSIKSMKPKILTIVEQEANHNGPVFVERFTEALHYYSSLFDSLEG 484
                         ********************************99999988....*********************************************88 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                         +    s ++  +++++lg++i+nvva  ga+r+erhetl++Wr r+++aGF+ v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW+
  WALNUT_00022446-RA 485 SGLVPSTQDLLMSEVYLGEQICNVVASDGADRVERHETLSQWRVRMGTAGFELVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWH 575
                         8889999************************************************************************************ PP

                GRAS 364 drpLvsvSaWr 374
                         +rpL+++SaW+
  WALNUT_00022446-RA 576 TRPLIATSAWQ 586
                         **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.3E-3043111No hitNo description
PfamPF120418.1E-3043105IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.314200565IPR005202Transcription factor GRAS
PfamPF035148.6E-135226586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MNKRNHQDTS GGAGYGGIRK SDFQSKAKIW EEGQDAGGGG GVDELLAVLG YKVKCSEMTD  60
VADKLEQLEM VMGAAPNLLR DTVHYNPSDL SGWLQSMLSE LNNSPNTFHD RMLQSHHIDD  120
PLHVPAESSS VTTNSQQQQF ETTQSSRIYN DDSEYDLRAI PGSAAYPQTQ DRERNQKRLK  180
TSGGSNSAPP LLPSSSPIVG VAAAGTVSEP TRSIVLVDSH ETGVQLVHTL MACAEAVQQD  240
NLKLADALVK HVELLAASQA GAMGKVATYF AEALARRIYK IYPQDCLDAS YSDILQMHFY  300
ETCPYLKFAH FTANQAILEA FATASKVHVI DFGLKQGMQW PALIQALALR PGGPPAFRLT  360
GIGPPQADNT DALQQVGWKL AQLAEAIGVE FQFRGFVATS LADIDPSMVD IRPDEAVAVN  420
SVFELHPMLA RPGAIDKVLS SIKSMKPKIL TIVEQEANHN GPVFVERFTE ALHYYSSLFD  480
SLEGSGLVPS TQDLLMSEVY LGEQICNVVA SDGADRVERH ETLSQWRVRM GTAGFELVHL  540
GSNAFKQASM LLALFAGGDG YRVEENNGCL MLGWHTRPLI ATSAWQLIVS DSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-692105852377Protein SCARECROW
5b3h_D6e-692105852377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843202.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2I4GH270.0A0A2I4GH27_JUGRE; DELLA protein GAI-like
STRINGEMJ161550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2