PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022483-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 300aa    MW: 32063.1 Da    PI: 9.941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022483-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-20154203255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +grW AeIrd +   g r r++lg+++taeeAa+a++aa+++l+g
  WALNUT_00022483-RA 154 NYRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTYDTAEEAARAYDAAARRLRG 203
                         59*******.**********55...2.59************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-16153212No hitNo description
PfamPF008475.4E-14154203IPR001471AP2/ERF domain
PROSITE profilePS5103222.761154211IPR001471AP2/ERF domain
SMARTSM003802.2E-32154217IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21154212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-29154211IPR001471AP2/ERF domain
PRINTSPR003672.7E-10155166IPR001471AP2/ERF domain
PRINTSPR003672.7E-10177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNCKALQTVP FLKSARFREH ETLGFLTETP CSDGPSCGTH LPITSSSAPY HLNLLHPLSQ  60
LPLLSTGVSA TVSSCGVDSK ETEPEIETPQ VLDGIAAVVG QHVLFGSDNT KRSVKSSNRP  120
ENSGFISISQ CFGTETLKTV DDKKGTGSVS VQKNYRGVRK RPWGRWSAEI RDRVGRCRHW  180
LGTYDTAEEA ARAYDAAARR LRGSKARTNF DIPSVLPVLA SPSTSSSSSS DAKKASAKAK  240
AARNAKKCTV VTSVAQLFSS NSTASVTARE ANAYGNGNVE LELKLGVNFL SRSATPSVVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17153212161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-17142210271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844343.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A2I4GKB80.0A0A2I4GKB8_JUGRE; ethylene-responsive transcription factor ERF084
STRINGEMJ187674e-79(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-23ERF family protein