PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022520-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 114aa    MW: 13057.5 Da    PI: 5.1787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022520-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-1058100145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ ++++E  l+++ +++ G++ W++Ia +++ gRt++++  +w+
  WALNUT_00022520-RA  58 KLEFSEDEVTLIARMFRLVGKR-WSLIAGRIP-GRTAEEIEKYWN 100
                         678*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.53953103IPR017877Myb-like domain
SMARTSM007174.2E-857105IPR001005SANT/Myb domain
PfamPF002492.6E-959101IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-860102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-1260101IPR009057Homeodomain-like
CDDcd001671.89E-760100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MIASTTYQSL RTTSLPVFLN QLNDFWWRIM GELLDHATDD HDSNDQDTKG VKSNQDSKLE  60
FSEDEVTLIA RMFRLVGKRW SLIAGRIPGR TAEEIEKYWN SRPTSSSSTS GERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808922.18e-80PREDICTED: uncharacterized protein LOC108982093
TrEMBLA0A2I4DP512e-78A0A2I4DP51_JUGRE; uncharacterized protein LOC108982093
STRINGcassava4.1_026343m5e-26(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.13e-16MYB_related family protein