PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022548-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 378aa    MW: 42149.5 Da    PI: 5.3213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022548-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.8e-07157178223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C +Cgk F+r  nL+ H+r H
  WALNUT_00022548-RA 157 FCDICGKGFKRDANLRMHMRAH 178
                         6*******************99 PP
2zf-C2H212.10.00061273289521
                         TTTEEESSHHHHHHHHH CS
             zf-C2H2   5 dCgksFsrksnLkrHir 21 
                          Cg+sFsrk+ L  H+ 
  WALNUT_00022548-RA 273 TCGTSFSRKDKLFGHMA 289
                         6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.12E-6153179No hitNo description
PROSITE profilePS5015712.196156183IPR007087Zinc finger, C2H2
SMARTSM003550.0017156178IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-6156178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SMARTSM00355110204237IPR015880Zinc finger, C2H2-like
SMARTSM0035513242264IPR015880Zinc finger, C2H2-like
SMARTSM00355230270294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MFNIGESFPT PARYTGELGF DPAQVRLGSS DPRVPLLNLS TVRNKMDNLQ RFLSDSVNRN  60
QLIGQDQMDL VSSEIVSAIH QVIVNGAALL ACTQTPSPIE SAPNPTMPPK FPGESSVSLK  120
VEAFNEEVKN ENLVFESDDS EIVELDAMEL LAEHIHFCDI CGKGFKRDAN LRMHMRAHGN  180
QYKTPEALAK PERHRADPCL NTRFSCPYEG CNRNRLHKKF RPLKSVTCAK NHFKRSHCPK  240
MYSCNRCNKK SFSVVADLKN HLKHCGEARW RCTCGTSFSR KDKLFGHMAL FEGHMPAVGD  300
EDEDERAKDP AEAAAVTAMD EDENEDEEED VVMVKGGELT PENSSDNGFF DGLLDGFSSI  360
ESFCLRDVLV SPIGFDGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860347.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2I4HW450.0A0A2I4HW45_JUGRE; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGcassava4.1_009526m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-83C2H2 family protein