PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022570-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 255aa    MW: 27779.1 Da    PI: 6.6712
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022570-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.3e-38391401101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPv G+v++il+lqqq+++l
  WALNUT_00022570-RA  39 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLVHVPVNRRHDAVVTISYEAQARLSDPVFGCVSTILALQQQVASL 129
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +aela+++++l
  WALNUT_00022570-RA 130 QAELAMVQTQL 140
                         ******99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.71538140IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3839137IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAEPQGDDST TSGTRRKGMG KRALALAEVE PAVSAAAAPC GACKFLRRKC VSGCIFAPHF  60
GSDQGAARFA AVHKVFGASN VSKLLVHVPV NRRHDAVVTI SYEAQARLSD PVFGCVSTIL  120
ALQQQVASLQ AELAMVQTQL INSRFAFANA IQNSHQHAHE EQHQQQQQHE QRDFQTVLQP  180
DYSNNSSAST NLVNKINGFT TTEFDLAGDT TAPISSQSLD PLVLRPLSRP SQDEEEYEEE  240
SRIPPVFVNK TLHLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-38311463115LOB family transfactor Ramosa2.1
5ly0_B5e-38311463115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858299.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-76LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2I4HQ760.0A0A2I4HQ76_JUGRE; LOB domain-containing protein 20
STRINGXP_002525698.11e-101(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-60LOB domain-containing protein 20