PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022647-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 202aa    MW: 21895.8 Da    PI: 8.1674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022647-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.89.8e-4091091100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeAe r+rdPvyG+vg+i++lqqq+ +l
  WALNUT_00022647-RA   9 PCGACKFLRRKCINGCVFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEAESRIRDPVYGCVGHIFTLQQQVVNL 99 
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela ++++
  WALNUT_00022647-RA 100 QAELAFVQAR 109
                         *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1028110IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-389107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSASNGGGPC GACKFLRRKC INGCVFAPYF DSDQGTAHFA AVHKVFGASN ASKLLLRIPA  60
HKRLDAVVTL CYEAESRIRD PVYGCVGHIF TLQQQVVNLQ AELAFVQARL ATLHRLPPPH  120
SQSPSPTNHH SSSDLGSTSD LQSNSNSAMH FDPLHPHPIP TELTSFLNSL DGDLEAGTVQ  180
VLAREIISRY LPGVRFRPSS PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3851037104LOB family transfactor Ramosa2.1
5ly0_B2e-3851037104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806966.11e-148PREDICTED: LOB domain-containing protein 31-like
SwissprotO813222e-74LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2I4DIJ31e-147A0A2I4DIJ3_JUGRE; LOB domain-containing protein 31-like
STRINGEOX961941e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.19e-77LOB domain-containing protein 31